CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00383	Canola	extracellular	21.51	46.96
CDX78831	Canola	extracellular	18.33	44.23
CDY54330	Canola	cytosol, nucleus, plastid	61.75	43.91
CDX73215	Canola	cytosol, nucleus, plastid	64.94	33.2
CDX87648	Canola	extracellular	63.74	33.2
VIT_18s0001g01120.t01	Wine grape	nucleus	61.75	31.83
KRH51666	Soybean	nucleus	60.96	31.42
KRH61001	Soybean	nucleus	60.56	31.21
KRH05990	Soybean	cytosol, nucleus, plastid	58.57	30.0
KRH17475	Soybean	nucleus	57.77	29.59
CDY22923	Canola	extracellular	21.51	24.66
Solyc01g111700.1.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	47.41	24.59
PGSC0003DMT400015775	Potato	endoplasmic reticulum, golgi, plasma membrane	47.01	24.28
CDY47438	Canola	plastid	21.12	18.34
CDY01387	Canola	cytosol	5.18	6.07
CDX83742	Canola	cytosol	0.4	1.75
CDY31902	Canola	cytosol	0.0	0.0
CDX83743	Canola	cytosol	0.0	0.0
CDY54331	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY31901	EnsemblPlantsGene:GSBRNA2T00050649001	PANTHER:PTHR10758	PANTHER:PTHR10758:SF7	ProteinID:CDY31901	ProteinID:CDY31901.1
UniParc:UPI0004EE36A2	UniProt:A0A078H278	MapMan:35.1	:	:	:

Description

BnaC07g15510DBnaC07g15510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H278]

Coordinates

chrLK032281:+:466572..468187

Molecular Weight (calculated)

28642.4 Da

IEP (calculated)

8.230

GRAVY (calculated)

-0.336

Length

251 amino acids

Sequence
(BLAST)

001: MAQDVEMKDN HTPSQSTMQH LKEIADLIDT GSYTKEVRRI ARAVRLTIGL RRKLTSSVLT SFLDFALVPG SEPHSRLSSF TPKGDEHDME VDTATSATQP
101: PSKNLPSELE IYCYFIVLLF LIDQKKYPEL NLVLQQALLV SRTLTDEPSI YELNPRVSLL ISSLTVNSLV HLFIRALHHS ATLRHDELGQ ETLVNMLLRN
201: YFRYNLYDQA EKLRSKAPPF EAHSKQQFCG YLFYLGKIRT RKSPSSSQES P

Best Arabidopsis Sequence Match ( AT1G20200.1 )
(BLAST)

001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF

Arabidopsis Description

RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.