Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004106.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY07438 | Canola | nucleus | 100.0 | 98.61 |
| AT5G45010.1 | Thale cress | cytosol | 81.69 | 79.45 |
| Solyc03g114170.2.1 | Tomato | nucleus | 66.2 | 78.33 |
| KRH63506 | Soybean | cytosol | 78.87 | 76.71 |
| KRH16129 | Soybean | cytosol | 77.46 | 75.34 |
| KRH54417 | Soybean | cytosol | 76.06 | 73.97 |
| PGSC0003DMT400062932 | Potato | cytosol, mitochondrion, nucleus | 74.65 | 71.62 |
| PGSC0003DMT400069698 | Potato | nucleus | 73.24 | 70.27 |
| VIT_14s0066g01530.t01 | Wine grape | nucleus | 71.83 | 69.86 |
| VIT_17s0000g08090.t01 | Wine grape | cytosol, mitochondrion, nucleus | 66.2 | 68.12 |
| KRH04963 | Soybean | vacuole | 67.61 | 40.34 |
Protein Annotations
| MapMan:16.11.2.4 | UniProt:A0A078HRB3 | EnsemblPlants:CDY39298 | ProteinID:CDY39298 | ProteinID:CDY39298.1 | InterPro:DSS1_SEM1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006406 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008541 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0043248 | EnsemblPlantsGene:GSBRNA2T00067547001 |
| PFAM:PF05160 | PANTHER:PTHR16771 | PANTHER:PTHR16771:SF5 | SMART:SM01385 | UniParc:UPI0002541400 | SEG:seg |
Description
BnaC06g26930DBnaC06g26930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRB3]
Coordinates
chrLK032444:+:309681..310501
Molecular Weight (calculated)
8607.4 Da
IEP (calculated)
3.599
GRAVY (calculated)
-1.448
Length
71 amino acids
Sequence
(BLAST)
(BLAST)
1: MAAEQKATTE EVKMDLFEDD DEFEEFEINE DWVEKEEVKE VGQQWEDDWD DDDVNDDFSL QLRKELESDK K
1: MAAEPKAATA EVVKMDLFED DDEFEEFEIN EDWLEKEEVK EVSQQWEDDW DDDDVNDDFS RQLRKELENG TDKK
Arabidopsis Description
ATDSS1(I)Deletion of SUV3 suppressor 1(I) [Source:UniProtKB/TrEMBL;Acc:F4I886]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.