Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400015775 | |
| PGSC0003DMT400034206 | |
| PGSC0003DMT400056705 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g114170.2.1 | Tomato | nucleus | 81.08 | 100.0 |
| PGSC0003DMT400069698 | Potato | nucleus | 85.14 | 85.14 |
| KRH54417 | Soybean | cytosol | 82.43 | 83.56 |
| KRH63506 | Soybean | cytosol | 81.08 | 82.19 |
| KRH16129 | Soybean | cytosol | 77.03 | 78.08 |
| VIT_14s0066g01530.t01 | Wine grape | nucleus | 75.68 | 76.71 |
| Bra004106.1-P | Field mustard | nucleus | 71.62 | 74.65 |
| CDY39298 | Canola | nucleus | 71.62 | 74.65 |
| VIT_17s0000g08090.t01 | Wine grape | cytosol, mitochondrion, nucleus | 68.92 | 73.91 |
| CDY07438 | Canola | nucleus | 71.62 | 73.61 |
| AT5G45010.1 | Thale cress | cytosol | 67.57 | 68.49 |
| KRH04963 | Soybean | vacuole | 70.27 | 43.7 |
Protein Annotations
| EntrezGene:102591989 | MapMan:16.11.2.4 | InterPro:DSS1_SEM1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006406 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008541 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0043248 | UniProt:M1C9T2 | PFAM:PF05160 | EnsemblPlantsGene:PGSC0003DMG400024492 | PGSC:PGSC0003DMG400024492 |
| EnsemblPlants:PGSC0003DMT400062932 | PANTHER:PTHR16771 | PANTHER:PTHR16771:SF5 | SMART:SM01385 | UniParc:UPI0002952158 | RefSeq:XP_006345043.1 |
| SEG:seg | : | : | : | : | : |
Description
Deleted in split hand/splt foot protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400024492]
Coordinates
chr3:+:54016300..54019783
Molecular Weight (calculated)
8913.9 Da
IEP (calculated)
3.762
GRAVY (calculated)
-1.518
Length
74 amino acids
Sequence
(BLAST)
(BLAST)
1: MATEQPKPAA KDVKMDLFED DDEFEEFAID QEWEDKEKGK EVTQQWEDDW DDDDVNDDFS LQLRKELEIN TEKK
1: MAAEPKAATA EVVKMDLFED DDEFEEFEIN EDWLEKEEVK EVSQQWEDDW DDDDVNDDFS RQLRKELENG TDKK
Arabidopsis Description
ATDSS1(I)Deletion of SUV3 suppressor 1(I) [Source:UniProtKB/TrEMBL;Acc:F4I886]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.