CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88892

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75990.1	EER88892	AT2G44950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0550100-01	Rice	plasma membrane	92.54	94.44
Zm00001d053232_P005	Maize	cytosol, nucleus, plastid	96.17	93.9
TraesCS4B01G265800.1	Wheat	plastid	90.12	91.6
TraesCS4B01G265700.1	Wheat	plastid	90.12	91.6
Zm00001d032010_P007	Maize	cytosol, nucleus, plastid	96.37	91.57
TraesCS4D01G265700.1	Wheat	unclear	89.92	91.39
HORVU4Hr1G071480.8	Barley	plastid	90.52	90.71
TraesCS4A01G044600.1	Wheat	golgi	89.52	90.61
KRH61001	Soybean	nucleus	79.23	80.7
KRH51666	Soybean	nucleus	78.63	80.08
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	78.43	79.71
VIT_18s0001g01120.t01	Wine grape	nucleus	77.82	79.26
VIT_03s0038g02590.t01	Wine grape	plastid	77.02	78.44
PGSC0003DMT400015774	Potato	nucleus	77.62	77.94
KRH17475	Soybean	nucleus	76.61	77.55
AT1G20200.1	Thale cress	cytosol	74.8	76.02
AT1G75990.1	Thale cress	cytosol	73.99	75.36
KRH05990	Soybean	cytosol, nucleus, plastid	74.19	75.1
HORVU7Hr1G080070.2	Barley	cytosol	14.52	75.0
GSMUA_Achr8P13080_001	Banana	cytosol, extracellular, plastid	40.12	73.43
GSMUA_Achr5P18970_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	78.83	71.09
GSMUA_Achr8P13090_001	Banana	cytosol	32.86	67.36
PGSC0003DMT400015775	Potato	endoplasmic reticulum, golgi, plasma membrane	61.29	62.55
CDY01387	Canola	cytosol	18.95	43.93
Bra012219.1-P	Field mustard	cytosol	18.95	43.93
Solyc10g044990.1.1	Tomato	cytosol, nucleus, peroxisome	10.08	32.68

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.3	InterPro:26S_Psome_reg_C	EntrezGene:8057843	UniProt:C5YH21	ncoils:Coil
EnsemblPlants:EES14113	ProteinID:EES14113	ProteinID:EES14113.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008541
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0030234	GO:GO:0042176	GO:GO:0050790
InterPro:IPR000717	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF08375	PFscan:PS50250	PANTHER:PTHR10758
PANTHER:PTHR10758:SF7	SMART:SM00088	SMART:SM00753	EnsemblPlantsGene:SORBI_3007G176200	SUPFAM:SSF46785	unigene:Sbi.18291
UniParc:UPI0001A87C3D	InterPro:WH_DNA-bd_sf	RefSeq:XP_002444618.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:+:61004086..61008119

Molecular Weight (calculated)

56060.4 Da

IEP (calculated)

8.805

GRAVY (calculated)

-0.251

Length

496 amino acids

Sequence
(BLAST)

001: MPEDVQMNDS EPQPAAPVPV AAAAAAAAPA LSTLHHLKEI ATVIEAGSLS KEVRRISRAF RLTVALRRRL AARDVSAFLA FALPASSEAY GRLTALVPKE
101: DDTEMDVDAA APATQISIKH GLPEIEIFCY LLVLIFLIDQ KKYDEAKACA NVSIARLKNL NRRTVDVLAS RLYFYYSYVY ELTNSLAEIR GTLLALHRMA
201: TLHRDELGQE TLLNLLLRNY LHYNLYDQAE KLRSKAPRFE AHSNQQFCRY LFYLGKIRTI QLEYTDAKES LLQAARKAPT TARGFRIQCN KWAIIVRLLL
301: GEIPERTVFM QKGMKKALTP YFELTNAVRV GDLELFRAVA DKFASTFSAD RTRNLIVRLR HNVIRTGLRN ISISYSRISL ADIAKKLRLD SENPIADAES
401: IVAKAIRDGA IDATIDHANG WMVSKETGDV YSTNEPQIAF NSRIAFCLNM HNEAVKAMRF PPNSHKEKES AEKRRERLQQ EEELAKHMAE EDDDDF

Best Arabidopsis Sequence Match ( AT1G20200.1 )
(BLAST)

001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF

Arabidopsis Description

RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.