Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P01610_001 | |
| GSMUA_Achr4P26960_001 | |
| GSMUA_Achr4P26970_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75990.1 | GSMUA_Achr1P01610_001 | AT2G44950.1 | 21798944 |
| AT1G75990.1 | GSMUA_Achr4P26960_001 | AT2G44950.1 | 21798944 |
| AT1G75990.1 | GSMUA_Achr4P26970_001 | AT2G44950.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G080070.2 | Barley | cytosol | 18.59 | 46.88 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 87.19 | 43.24 |
| GSMUA_Achr5P18970_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 85.54 | 37.64 |
| KRH61001 | Soybean | nucleus | 75.62 | 37.58 |
| KRH51666 | Soybean | nucleus | 75.62 | 37.58 |
| VIT_03s0038g02590.t01 | Wine grape | plastid | 75.21 | 37.37 |
| VIT_18s0001g01120.t01 | Wine grape | nucleus | 72.31 | 35.93 |
| PGSC0003DMT400015774 | Potato | nucleus | 71.9 | 35.22 |
| KRH05990 | Soybean | cytosol, nucleus, plastid | 71.07 | 35.1 |
| KRH17475 | Soybean | nucleus | 70.66 | 34.9 |
| Os09t0541900-01 | Rice | cytosol, nucleus, plastid | 69.42 | 34.5 |
| AT1G75990.1 | Thale cress | cytosol | 68.59 | 34.09 |
| HORVU5Hr1G084540.1 | Barley | cytosol, nucleus, plastid | 69.83 | 34.07 |
| TraesCS5A01G335200.1 | Wheat | golgi | 69.83 | 34.07 |
| TraesCS5D01G340000.1 | Wheat | cytosol, nucleus, plastid | 69.83 | 34.07 |
| AT1G20200.1 | Thale cress | cytosol | 68.18 | 33.81 |
| TraesCS4B01G265700.1 | Wheat | plastid | 68.18 | 33.81 |
| TraesCS4D01G265700.1 | Wheat | unclear | 67.77 | 33.61 |
| Os08t0550100-01 | Rice | plasma membrane | 67.36 | 33.54 |
| HORVU4Hr1G071480.8 | Barley | plastid | 68.59 | 33.54 |
| TraesCS4B01G265800.1 | Wheat | plastid | 67.36 | 33.4 |
| TraesCS4A01G044600.1 | Wheat | golgi | 67.36 | 33.27 |
| EES14113 | Sorghum | cytosol, nucleus, plastid | 67.36 | 32.86 |
| Zm00001d053232_P005 | Maize | cytosol, nucleus, plastid | 68.18 | 32.48 |
| Solyc10g044990.1.1 | Tomato | cytosol, nucleus, peroxisome | 20.25 | 32.03 |
| Zm00001d032010_P007 | Maize | cytosol, nucleus, plastid | 66.53 | 30.84 |
| PGSC0003DMT400015775 | Potato | endoplasmic reticulum, golgi, plasma membrane | 59.92 | 29.84 |
| CDY01387 | Canola | cytosol | 6.2 | 7.01 |
| Bra012219.1-P | Field mustard | cytosol | 6.2 | 7.01 |
| GSMUA_Achr8P13080_001 | Banana | cytosol, extracellular, plastid | 0.41 | 0.37 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P13090_001 | EnsemblPlants:GSMUA_Achr8T13090_001 | EnsemblPlantsGene:GSMUA_Achr8G13090_001 | PANTHER:PTHR10758 | PANTHER:PTHR10758:SF7 | SEG:seg |
| UniParc:UPI0002950F57 | UniProt:M0TQ12 | MapMan:35.1 | : | : | : |
Description
Probable 26S proteasome non-ATPase regulatory subunit 3 [Source:GMGC_GENE;Acc:GSMUA_Achr8G13090_001]
Coordinates
chr8:-:9852155..9855982
Molecular Weight (calculated)
27390.1 Da
IEP (calculated)
9.382
GRAVY (calculated)
-0.168
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MTADVEMKEV QAFSNSVSSA GVPSTLQHMK EIASLIESGA QAKEVRRIVR AVRLTMMLRR KLRAPLVAAF LGYVLTPASE VFAKLSSYLP KDDDHDMDVD
101: TAASAVQGPA KHSIPELEIY CYLLVLIFLI DQKRYNEAKA CSSASIARLR NMNRRTVDVI AARLYFYYSF TYELTNSLAE IRGTLLALHR MATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQAK TS
101: TAASAVQGPA KHSIPELEIY CYLLVLIFLI DQKRYNEAKA CSSASIARLR NMNRRTVDVI AARLYFYYSF TYELTNSLAE IRGTLLALHR MATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQAK TS
001: MTQDVEMKDN QTPTQSVVSA PTSTLQNLKE IAALIDTGSY TKEVRRIARA VRLTVGLRRK LTGSVISSFL DFALVPGSEA HTRLSSFVPK SDEHDMEVDT
101: ASSNSQAPPK HLPAELEIYC YFIVLLFLID QKKYNEAKVC STASIARLKS VNRRTVDVIA SKLYFYYSLS YELTNDLAEI RSTLLALHHS ATLRHDELGQ
201: ETLLNLLLRN YLHYNLYDQA EKLRSKAPRF EAHSNQQFCR YLFYLGKIRT IQLEYTDAKE SLLQAARKAP VASLGFRIQC NKWAIIVRLL LGEIPERSIF
301: TQKGMEKTLR PYFELTNAVR IGDLELFGKI QEKFAKTFAE DRTHNLIVRL RHNVIRTGLR NISISYSRIS LQDVAQKLRL NSANPVADAE SIVAKAIRDG
401: AIDATIDHKN GCMVSKETGD IYSTNEPQTA FNSRIAFCLN MHNEAVRALR FPPNTHREKE SEEKRREMKQ QEEELAKYMA EEDDDDF
101: ASSNSQAPPK HLPAELEIYC YFIVLLFLID QKKYNEAKVC STASIARLKS VNRRTVDVIA SKLYFYYSLS YELTNDLAEI RSTLLALHHS ATLRHDELGQ
201: ETLLNLLLRN YLHYNLYDQA EKLRSKAPRF EAHSNQQFCR YLFYLGKIRT IQLEYTDAKE SLLQAARKAP VASLGFRIQC NKWAIIVRLL LGEIPERSIF
301: TQKGMEKTLR PYFELTNAVR IGDLELFGKI QEKFAKTFAE DRTHNLIVRL RHNVIRTGLR NISISYSRIS LQDVAQKLRL NSANPVADAE SIVAKAIRDG
401: AIDATIDHKN GCMVSKETGD IYSTNEPQTA FNSRIAFCLN MHNEAVRALR FPPNTHREKE SEEKRREMKQ QEEELAKYMA EEDDDDF
Arabidopsis Description
RPN3B26S proteasome non-ATPase regulatory subunit 3 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.