Factsheet for Os09t0541900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0550400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75990.1	Os04t0550400-01	AT2G44950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0550100-01	Rice	plasma membrane	91.17	91.36
TraesCS5A01G335200.1	Wheat	golgi	92.81	91.13
TraesCS5D01G340000.1	Wheat	cytosol, nucleus, plastid	92.2	90.52
HORVU5Hr1G084540.1	Barley	cytosol, nucleus, plastid	92.2	90.52
KRH61001	Soybean	nucleus	80.29	80.29
VIT_18s0001g01120.t01	Wine grape	nucleus	79.67	79.67
KRH51666	Soybean	nucleus	79.67	79.67
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	79.67	79.51
VIT_03s0038g02590.t01	Wine grape	plastid	79.26	79.26
PGSC0003DMT400015774	Potato	nucleus	79.67	78.54
KRH17475	Soybean	nucleus	77.82	77.35
AT1G20200.1	Thale cress	cytosol	76.59	76.43
AT1G75990.1	Thale cress	cytosol	75.36	75.36
KRH05990	Soybean	cytosol, nucleus, plastid	75.77	75.31
GSMUA_Achr8P13080_001	Banana	cytosol, extracellular, plastid	40.45	72.69
GSMUA_Achr5P18970_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	79.88	70.73
GSMUA_Achr8P13090_001	Banana	cytosol	34.5	69.42
PGSC0003DMT400015775	Potato	endoplasmic reticulum, golgi, plasma membrane	62.63	62.76
CDY01387	Canola	cytosol	20.12	45.79
Bra012219.1-P	Field mustard	cytosol	20.12	45.79
Solyc10g044990.1.1	Tomato	cytosol, nucleus, peroxisome	9.86	31.37

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.3	InterPro:26S_Psome_reg_C	EntrezGene:4347735	EMBL:AB031299	ProteinID:BAC79193.1
ProteinID:BAD46593.1	ProteinID:BAF25731.1	ProteinID:BAT09209.1	ncoils:Coil	ProteinID:EAZ45527.1	GO:GO:0000502
GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0008541	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0030234
GO:GO:0042176	GO:GO:0050790	InterPro:IPR000717	EnsemblPlantsGene:Os09g0541900	EnsemblPlants:Os09t0541900-01	InterPro:PCI_dom
PFAM:PF01399	PFAM:PF08375	PFscan:PS50250	PANTHER:PTHR10758	PANTHER:PTHR10758:SF7	UniProt:Q8W426
SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI00000A63F6	InterPro:WH_DNA-bd_sf	RefSeq:XP_015612691.1
SEG:seg	:	:	:	:	:

Description

Similar to 26S proteasome subunit RPN3a. (Os09t0541900-01);Similar to 26S proteasome subunit RPN3a. (Os09t0541900-02);Similar to cDNA clone:J023145D07, full insert sequence. (Os09t0541900-03)

Coordinates

chr9:-:21338841..21342208

Molecular Weight (calculated)

54984.0 Da

IEP (calculated)

8.826

GRAVY (calculated)

-0.274

Length

487 amino acids

Sequence
(BLAST)

001: MPEDVEMNDS QPQPAAAPPP AASTLQHLKE IASVIEAGSL TKEVRRISRA VRLTVALRRR LAARDVAAFL AFALPHSSEA FARLSSLLPK EDGSEMDVDL
101: AAPAAQVSIK HGLPEIEIYC YLLVLIFLID NKKYDEAKAC ASASITRLKN LNRRTVDVLA SRVFTYYSYV HELTSSLAEI RGTLLALHRM ATLHRDELGQ
201: ETLLNLLLRN YLHYNLYDQA EKLRSKAPRF EAHSNQQFCR YLFYLGKIRT IQLEYTDAKE SLLQAARKAP TTARGFRVQC NKWAIIVRLL LGEIPERTVF
301: MQKGMKAALA PYFELTNAVR VGDLELFRAV AEKFASTFSA DRTRNLIVRL RHNVIRTGLR NISISYSRIS LADIAKKLRL DSENPVADAE SIVAKAIRDG
401: AIDATIDHAN GWMVSKETGD VYSTNEPQIA FNSRIAFCLN MHNEAVKALR FPPNSHKEKE SAEKRRERLQ QEEELAKHMA EEDDDDF

Best Arabidopsis Sequence Match ( AT1G20200.1 )
(BLAST)

001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF

Arabidopsis Description

RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.