Factsheet for Bra015799.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004106.1-P
Bra004879.1-P
Bra040332.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75990.1	Bra004879.1-P	AT2G44950.1	21798944
AT1G75990.1	Bra040332.1-P	AT2G44950.1	21798944
AT1G75990.1	Bra004106.1-P	AT5G45010.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87648	Canola	extracellular	99.79	99.79
AT1G75990.1	Thale cress	cytosol	91.08	90.14
KRH61001	Soybean	nucleus	81.95	81.11
KRH51666	Soybean	nucleus	81.74	80.9
VIT_18s0001g01120.t01	Wine grape	nucleus	80.08	79.26
KRH17475	Soybean	nucleus	80.08	78.78
KRH05990	Soybean	cytosol, nucleus, plastid	78.22	76.94
Solyc01g111700.1.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	62.45	62.19
PGSC0003DMT400015775	Potato	endoplasmic reticulum, golgi, plasma membrane	62.66	62.14
Bra012219.1-P	Field mustard	cytosol	19.5	43.93

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.3	InterPro:26S_Psome_reg_C	EnsemblPlantsGene:Bra015799	EnsemblPlants:Bra015799.1	EnsemblPlants:Bra015799.1-P
ncoils:Coil	GO:GO:0000502	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0016020	GO:GO:0019538	GO:GO:0030234	GO:GO:0042176	GO:GO:0050790	InterPro:IPR000717
UniProt:M4DH22	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF08375	PFscan:PS50250	PANTHER:PTHR10758
PANTHER:PTHR10758:SF7	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0002541FF5	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

AT1G75990 (E=3e-224) | 26S proteasome regulatory subunit S3, putative (RPN3)

Coordinates

chrA07:-:20807441..20809719

Molecular Weight (calculated)

54887.6 Da

IEP (calculated)

8.787

GRAVY (calculated)

-0.370

Length

482 amino acids

Sequence
(BLAST)

001: MKDNNQTPAQ SIVSATTSTL QHLKEIAALI DTGSYTKEVR RVARAVRLTV GIRQKLTASV VASFLDFALG PGSEAHARLS SFVPKSDEHD MEVDTASSTS
101: LAASKHVPVE LEIYCYFIVL LFLIDQKKYN EAKACSSASI ARLKSLNKRT IDVIASRLYF YYSLSYEMTG DLAEIRGTLL SLHHSATLRH DELGQETLLN
201: LLLRNYLHYN LYDQAEKLRS KAPRFEAHSN QQFCRYLFYL GKIRTIQLEY TDAKESLLQA ARKAPVAALG FRVQCNKWAI LVRLLLGEIP ERSIFMQKGM
301: EKALRPYFEL TNAVRIGDLE LFRNVQEKFS KTFSEDRTHN LIVRLRHNVI RTGLRNISIS YSRISLTDVA QKLRLNSANP VADAESIVAK AIRDGAIDAT
401: IDHKNGYMVS KETGDIYSTN EPQNAFNSRI AFCLNMHNEA VRALRFPPNT HREKESEEKR REMKQQEEEL AKYMAEEDDD DF

Best Arabidopsis Sequence Match ( AT1G75990.1 )
(BLAST)

001: MTQDVEMKDN QTPTQSVVSA PTSTLQNLKE IAALIDTGSY TKEVRRIARA VRLTVGLRRK LTGSVISSFL DFALVPGSEA HTRLSSFVPK SDEHDMEVDT
101: ASSNSQAPPK HLPAELEIYC YFIVLLFLID QKKYNEAKVC STASIARLKS VNRRTVDVIA SKLYFYYSLS YELTNDLAEI RSTLLALHHS ATLRHDELGQ
201: ETLLNLLLRN YLHYNLYDQA EKLRSKAPRF EAHSNQQFCR YLFYLGKIRT IQLEYTDAKE SLLQAARKAP VASLGFRIQC NKWAIIVRLL LGEIPERSIF
301: TQKGMEKTLR PYFELTNAVR IGDLELFGKI QEKFAKTFAE DRTHNLIVRL RHNVIRTGLR NISISYSRIS LQDVAQKLRL NSANPVADAE SIVAKAIRDG
401: AIDATIDHKN GCMVSKETGD IYSTNEPQTA FNSRIAFCLN MHNEAVRALR FPPNTHREKE SEEKRREMKQ QEEELAKYMA EEDDDDF

Arabidopsis Description

RPN3B26S proteasome non-ATPase regulatory subunit 3 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.