Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G413900.1 | Wheat | mitochondrion | 90.8 | 96.15 |
| TraesCS7A01G421700.1 | Wheat | cytosol | 95.8 | 95.8 |
| TraesCS7B01G321900.1 | Wheat | cytosol | 80.0 | 81.2 |
| Os09t0326800-01 | Rice | plasma membrane | 68.52 | 67.68 |
| Os06t0699900-01 | Rice | plasma membrane | 68.64 | 67.04 |
| TraesCS6B01G144500.1 | Wheat | cytosol | 67.5 | 65.71 |
| HORVU7Hr1G097500.16 | Barley | endoplasmic reticulum, golgi, plasma membrane | 43.52 | 65.36 |
| GSMUA_Achr11P... | Banana | cytosol | 64.09 | 63.51 |
| Solyc07g053650.2.1 | Tomato | nucleus | 58.64 | 62.77 |
| VIT_12s0028g03130.t01 | Wine grape | cytosol | 61.59 | 60.9 |
| KRH55899 | Soybean | endoplasmic reticulum, nucleus | 61.14 | 60.79 |
| KRH25643 | Soybean | endoplasmic reticulum, nucleus | 61.02 | 60.68 |
| PGSC0003DMT400024306 | Potato | cytosol | 60.91 | 59.82 |
| CDY38389 | Canola | cytosol, extracellular | 59.89 | 59.08 |
| AT4G28470.1 | Thale cress | cytosol | 59.77 | 59.03 |
| Bra011030.1-P | Field mustard | cytosol | 59.66 | 58.92 |
| CDY35187 | Canola | cytosol, extracellular | 59.66 | 58.86 |
| CDY05774 | Canola | cytosol | 59.77 | 58.71 |
| AT2G20580.1 | Thale cress | cytosol | 59.32 | 58.59 |
| Bra024200.1-P | Field mustard | cytosol | 58.98 | 58.25 |
| CDY29907 | Canola | extracellular | 58.86 | 58.14 |
| Bra036488.1-P | Field mustard | cytosol, extracellular, plasma membrane | 55.0 | 58.1 |
| CDX92875 | Canola | extracellular | 58.75 | 58.02 |
| CDY31952 | Canola | plasma membrane | 56.14 | 57.71 |
| Bra010366.1-P | Field mustard | cytosol | 57.84 | 57.45 |
| CDY14239 | Canola | cytosol, extracellular | 57.73 | 57.21 |
| Solyc10g008180.1.1 | Tomato | plastid | 47.39 | 57.05 |
| CDX97442 | Canola | cytosol | 56.82 | 56.63 |
| KRH57774 | Soybean | endoplasmic reticulum, plasma membrane | 17.61 | 53.08 |
| AT4G08140.1 | Thale cress | cytosol | 4.77 | 50.0 |
| PGSC0003DMT400056260 | Potato | cytosol | 9.66 | 47.22 |
| KRH57675 | Soybean | cytosol | 15.57 | 45.21 |
| Solyc10g008170.2.1 | Tomato | cytosol | 10.23 | 44.55 |
| CDY72396 | Canola | cytosol | 6.82 | 41.67 |
| KRH30269 | Soybean | cytosol | 8.41 | 36.1 |
| CDX99107 | Canola | cytosol | 8.41 | 28.57 |
| CDY33144 | Canola | extracellular | 9.66 | 27.16 |
| CDY65736 | Canola | extracellular | 11.02 | 23.89 |
| GSMUA_Achr1P10580_001 | Banana | cytosol, nucleus, plasma membrane | 3.18 | 19.31 |
| Bra003811.1-P | Field mustard | endoplasmic reticulum | 4.43 | 15.85 |
| TraesCS1B01G363000.1 | Wheat | cytosol | 15.23 | 13.37 |
| TraesCS2B01G450800.2 | Wheat | cytosol, endoplasmic reticulum | 15.23 | 13.01 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.6.2.2.1 | InterPro:26S_Psome_Rpn1 | InterPro:ARM-like | InterPro:ARM-type_fold | ncoils:Coil |
| GO:GO:0000502 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:0042176 |
| InterPro:IPR011989 | PFAM:PF01851 | PIRSF:PIRSF015965 | PANTHER:PTHR10943 | PANTHER:PTHR10943:SF8 | InterPro:Proteasome/cyclosome_rpt |
| SUPFAM:SSF48371 | EnsemblPlantsGene:TraesCS7B01G322000 | EnsemblPlants:TraesCS7B01G322000.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7B:+:572642712..572650418
Molecular Weight (calculated)
96709.6 Da
IEP (calculated)
5.392
GRAVY (calculated)
0.077
Length
880 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGDDLSEED LELKARLEDC VERAQSRDPR LRIGAIDTLR KEIRAATSSM TSVPKPLKFL RAHYGTLKDC FQRMRDPAQK KHMADILSVL ALTASAEGER
101: ESLKYCMMGS LVDICSWGHV YVRNLAFEIG KEWKDNGSST PIESKIELVL EIVKFHMKHN AETEALDLLM EVGYLEMLFD EKYEEYLARL FCLVDFTNYK
201: RACLYLTTSS KYLLTPDREA YEATLYIAFG MYGKFRDLAS ALRIVLLVND DKCCDQSVKI VFAETEDFSL KQQLAFMIAR YGLSMEVDDE MVADENEKNA
301: LQEVVNNTKL SEGYHMLARD IGVMEPKSPE DIYKVHLIGG QGAKSSSLDS ARQNLAATFV NAFVNAGYCQ DKLMTAISDS SENLLFKKNE LGKASAVASL
401: GMIHLWDHDS GFAILDKYLQ SDDTHVVAGA LLGIGIVSCG VKNDYDPALA LISGYSTSAA SITRIGAILG LGIAYAGSRK DKLKSLFLIT LSDSQAPLGD
501: LVFSAISLGL VFVGSCNEEI AQSIISVLKN LIKAELADPI IRLLPLSIGL LYLGKQEGPK ANVVKVSETF DEIMKEVSKT FDKIMKDYWN ITLMSLAYAG
601: TGNVLKVQEL LSICSKKEGG SHQGPAVLGI ALIAMAEELG IEMAVRSLEQ LFKYGDYNIR RAVPLALGML YISNPKVDVV DTLSRLSNDP DGQVMMAATI
701: SLGLIGAGTN NARIAALLRN LSSQEHGVYL FCVRIAQGLV HLGKGLLTLA PYHSDRLLLS PVALAGLVTV MHACLNMQST ILGEYPYMLY ILSLAMQPRM
801: LLTVDEDLKP LHVPVCVGQA VDVVGQAGSP RTITGFHTHN TPVLLAAGER AELATEEYIP LTPILEGFVI LRKNPEHHED
101: ESLKYCMMGS LVDICSWGHV YVRNLAFEIG KEWKDNGSST PIESKIELVL EIVKFHMKHN AETEALDLLM EVGYLEMLFD EKYEEYLARL FCLVDFTNYK
201: RACLYLTTSS KYLLTPDREA YEATLYIAFG MYGKFRDLAS ALRIVLLVND DKCCDQSVKI VFAETEDFSL KQQLAFMIAR YGLSMEVDDE MVADENEKNA
301: LQEVVNNTKL SEGYHMLARD IGVMEPKSPE DIYKVHLIGG QGAKSSSLDS ARQNLAATFV NAFVNAGYCQ DKLMTAISDS SENLLFKKNE LGKASAVASL
401: GMIHLWDHDS GFAILDKYLQ SDDTHVVAGA LLGIGIVSCG VKNDYDPALA LISGYSTSAA SITRIGAILG LGIAYAGSRK DKLKSLFLIT LSDSQAPLGD
501: LVFSAISLGL VFVGSCNEEI AQSIISVLKN LIKAELADPI IRLLPLSIGL LYLGKQEGPK ANVVKVSETF DEIMKEVSKT FDKIMKDYWN ITLMSLAYAG
601: TGNVLKVQEL LSICSKKEGG SHQGPAVLGI ALIAMAEELG IEMAVRSLEQ LFKYGDYNIR RAVPLALGML YISNPKVDVV DTLSRLSNDP DGQVMMAATI
701: SLGLIGAGTN NARIAALLRN LSSQEHGVYL FCVRIAQGLV HLGKGLLTLA PYHSDRLLLS PVALAGLVTV MHACLNMQST ILGEYPYMLY ILSLAMQPRM
801: LLTVDEDLKP LHVPVCVGQA VDVVGQAGSP RTITGFHTHN TPVLLAAGER AELATEEYIP LTPILEGFVI LRKNPEHHED
001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
Arabidopsis Description
RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.