Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 3
- extracellular 2
- vacuole 2
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G413800.1 | Wheat | cytosol | 65.53 | 61.94 |
| TraesCS7A01G421600.1 | Wheat | mitochondrion | 69.8 | 50.06 |
| TraesCS7B01G321900.1 | Wheat | cytosol | 69.11 | 46.71 |
| TraesCS7D01G413900.1 | Wheat | mitochondrion | 65.36 | 46.09 |
| TraesCS7B01G322000.1 | Wheat | cytosol | 65.36 | 43.52 |
| TraesCS7A01G421700.1 | Wheat | cytosol | 65.19 | 43.41 |
| Os09t0326800-01 | Rice | plasma membrane | 55.12 | 36.25 |
| HORVU6Hr1G021020.1 | Barley | cytosol | 55.12 | 35.97 |
| Os06t0699900-01 | Rice | plasma membrane | 54.78 | 35.63 |
| GSMUA_Achr11P... | Banana | cytosol | 51.71 | 34.12 |
| Solyc07g053650.2.1 | Tomato | nucleus | 46.76 | 33.33 |
| Solyc10g008180.1.1 | Tomato | plastid | 40.1 | 32.15 |
| VIT_12s0028g03130.t01 | Wine grape | cytosol | 47.95 | 31.57 |
| KRH55899 | Soybean | endoplasmic reticulum, nucleus | 47.61 | 31.53 |
| KRH25643 | Soybean | endoplasmic reticulum, nucleus | 47.61 | 31.53 |
| AT4G28470.1 | Thale cress | cytosol | 47.1 | 30.98 |
| AT2G20580.1 | Thale cress | cytosol | 47.1 | 30.98 |
| CDY31952 | Canola | plasma membrane | 44.88 | 30.72 |
| CDY29907 | Canola | extracellular | 46.59 | 30.64 |
| Bra024200.1-P | Field mustard | cytosol | 46.59 | 30.64 |
| Bra036488.1-P | Field mustard | cytosol, extracellular, plasma membrane | 43.52 | 30.61 |
| PGSC0003DMT400024306 | Potato | cytosol | 46.76 | 30.58 |
| CDX92875 | Canola | extracellular | 46.42 | 30.53 |
| CDY38389 | Canola | cytosol, extracellular | 46.42 | 30.49 |
| CDY05774 | Canola | cytosol | 46.25 | 30.25 |
| Bra011030.1-P | Field mustard | cytosol | 45.9 | 30.19 |
| CDY35187 | Canola | cytosol, extracellular | 45.9 | 30.16 |
| CDX97442 | Canola | cytosol | 44.2 | 29.33 |
| Bra010366.1-P | Field mustard | cytosol | 43.86 | 29.01 |
| CDY14239 | Canola | cytosol, extracellular | 43.69 | 28.83 |
| KRH30269 | Soybean | cytosol | 10.07 | 28.78 |
| GSMUA_Achr1P10580_001 | Banana | cytosol, nucleus, plasma membrane | 4.78 | 19.31 |
| Bra003811.1-P | Field mustard | endoplasmic reticulum | 7.17 | 17.07 |
| Solyc10g008170.2.1 | Tomato | cytosol | 4.1 | 11.88 |
| KRH57675 | Soybean | cytosol | 5.8 | 11.22 |
| CDY65736 | Canola | extracellular | 6.83 | 9.85 |
| KRH57774 | Soybean | endoplasmic reticulum, plasma membrane | 4.78 | 9.59 |
| CDY33144 | Canola | extracellular | 5.12 | 9.58 |
| HORVU1Hr1G081810.8 | Barley | cytosol, plasma membrane | 15.53 | 9.52 |
| PGSC0003DMT400056260 | Potato | cytosol | 2.73 | 8.89 |
| CDX99107 | Canola | cytosol | 3.75 | 8.49 |
| AT4G08140.1 | Thale cress | cytosol | 0.85 | 5.95 |
| CDY72396 | Canola | cytosol | 0.68 | 2.78 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G097500.16 | EnsemblPlantsGene:HORVU7Hr1G097500 | Gene3D:1.25.10.10 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-like |
| InterPro:ARM-type_fold | InterPro:IPR011989 | PANTHER:PTHR10943 | PANTHER:PTHR10943:SF8 | SEG:seg | SUPFAM:SSF48371 |
| UniParc:UPI000B46DF61 | UniProt:A0A287XHD9 | MapMan:19.2.6.2.2.1 | : | : | : |
Description
No Description!
Coordinates
chrchr7H:-:592534592..592541054
Molecular Weight (calculated)
65179.3 Da
IEP (calculated)
5.665
GRAVY (calculated)
0.126
Length
586 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLTYHPSHS AMSNVSYIVW KLMGCSIALK LFLLRTLKLF HIVGSNYVNV LFDRNLALEI GQEWKDNGSS TPIESKIELV LEIVKFHMKH NAETEALDLL
101: MEVGYLEVLT GKKYEKYFTM LLDLVDSTNY KRACLYLTSC SMYVSEFIIF SNFIKIKLVT TRYVGVETGR YLLTPDREAY VATLDIAYAM YLKFRDLASA
201: LRIVLVNIGK NVKMVFGETT DFSLKQQFTF MIARYGLSVE IDDEMVADEN EKNALQEIVY NTKLSEGYHT LVRDIGVMEP KSPEDIYKVH LIGGRGTRSS
301: SLDSLRPNLA AIFVNAFVNA GYCQDKLMTA IPDYLLFKNN ELSKASVVAS LGMIHLWDPD SGFAKLDKYL HSNDTDVVAG ALLGIGIVSC GVKNDRDPAL
401: ALISEYSKGA ASITRIGGLL GLGIAYAGSQ KDELKSHFSV ILSNPQTPLE DLVFSAISLG LVFVGSCNEE IAGSIISVLK NHSEELAEPT IRLLPVAVGL
501: LYLGKQEMVD ATADEVSKAL EEPLRKYCGL TLTSLAYAGT GNVLKVQELL RCCSDYEPCH LDFWRKVEPA KGQQSLELLL LPWLKN
101: MEVGYLEVLT GKKYEKYFTM LLDLVDSTNY KRACLYLTSC SMYVSEFIIF SNFIKIKLVT TRYVGVETGR YLLTPDREAY VATLDIAYAM YLKFRDLASA
201: LRIVLVNIGK NVKMVFGETT DFSLKQQFTF MIARYGLSVE IDDEMVADEN EKNALQEIVY NTKLSEGYHT LVRDIGVMEP KSPEDIYKVH LIGGRGTRSS
301: SLDSLRPNLA AIFVNAFVNA GYCQDKLMTA IPDYLLFKNN ELSKASVVAS LGMIHLWDPD SGFAKLDKYL HSNDTDVVAG ALLGIGIVSC GVKNDRDPAL
401: ALISEYSKGA ASITRIGGLL GLGIAYAGSQ KDELKSHFSV ILSNPQTPLE DLVFSAISLG LVFVGSCNEE IAGSIISVLK NHSEELAEPT IRLLPVAVGL
501: LYLGKQEMVD ATADEVSKAL EEPLRKYCGL TLTSLAYAGT GNVLKVQELL RCCSDYEPCH LDFWRKVEPA KGQQSLELLL LPWLKN
001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
Arabidopsis Description
RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.