Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024200.1-P | Field mustard | cytosol | 93.04 | 93.04 |
| CDY29907 | Canola | extracellular | 93.04 | 93.04 |
| CDX92875 | Canola | extracellular | 92.7 | 92.7 |
| Bra011030.1-P | Field mustard | cytosol | 90.91 | 90.91 |
| CDY38389 | Canola | cytosol, extracellular | 90.91 | 90.81 |
| CDY35187 | Canola | cytosol, extracellular | 90.8 | 90.7 |
| AT2G20580.1 | Thale cress | cytosol | 90.68 | 90.68 |
| Bra010366.1-P | Field mustard | cytosol | 82.38 | 82.84 |
| CDX97442 | Canola | cytosol | 81.82 | 82.56 |
| CDY14239 | Canola | cytosol, extracellular | 82.15 | 82.43 |
| VIT_12s0028g03130.t01 | Wine grape | cytosol | 82.04 | 82.13 |
| Solyc07g053650.2.1 | Tomato | nucleus | 75.42 | 81.75 |
| PGSC0003DMT400024306 | Potato | cytosol | 80.81 | 80.36 |
| GSMUA_Achr11P... | Banana | cytosol | 73.74 | 73.99 |
| Os02t0146700-02 | Rice | plasma membrane | 73.63 | 73.05 |
| TraesCS6D01G105500.1 | Wheat | golgi | 73.18 | 72.85 |
| TraesCS6A01G116500.1 | Wheat | golgi, unclear | 73.18 | 72.85 |
| HORVU6Hr1G021020.1 | Barley | cytosol | 73.06 | 72.49 |
| Zm00001d053881_P001 | Maize | mitochondrion, plastid | 72.5 | 72.42 |
| Zm00001d015259_P001 | Maize | cytosol | 72.17 | 72.25 |
| EES04513 | Sorghum | cytosol | 72.39 | 72.15 |
| TraesCS6B01G144500.1 | Wheat | cytosol | 73.06 | 72.01 |
| Os09t0326800-01 | Rice | plasma membrane | 70.59 | 70.59 |
| Os06t0699900-01 | Rice | plasma membrane | 71.16 | 70.37 |
| Solyc10g008180.1.1 | Tomato | plastid | 56.79 | 69.22 |
| AT4G08140.1 | Thale cress | cytosol | 6.4 | 67.86 |
| KRH57774 | Soybean | endoplasmic reticulum, plasma membrane | 20.76 | 63.36 |
| TraesCS7A01G421600.1 | Wheat | mitochondrion | 54.99 | 59.98 |
| TraesCS7B01G322000.1 | Wheat | cytosol | 59.03 | 59.77 |
| TraesCS7B01G321900.1 | Wheat | cytosol | 57.91 | 59.52 |
| TraesCS7D01G413900.1 | Wheat | mitochondrion | 55.44 | 59.45 |
| TraesCS7A01G421700.1 | Wheat | cytosol | 58.14 | 58.86 |
| TraesCS7D01G413800.1 | Wheat | cytosol | 38.5 | 55.32 |
| HORVU7Hr1G097500.16 | Barley | endoplasmic reticulum, golgi, plasma membrane | 30.98 | 47.1 |
| GSMUA_Achr1P10580_001 | Banana | cytosol, nucleus, plasma membrane | 2.81 | 17.24 |
| AT2G32730.1 | Thale cress | cytosol | 16.16 | 14.34 |
| AT1G04810.1 | Thale cress | cytosol | 15.94 | 14.19 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.6.2.2.1 | InterPro:26S_Psome_Rpn1 | EntrezGene:828964 | ProteinID:AEE85490.1 | InterPro:ARM-like |
| InterPro:ARM-type_fold | ArrayExpress:AT4G28470 | EnsemblPlantsGene:AT4G28470 | RefSeq:AT4G28470 | TAIR:AT4G28470 | RefSeq:AT4G28470-TAIR-G |
| EnsemblPlants:AT4G28470.1 | TAIR:AT4G28470.1 | EMBL:AY230829 | Unigene:At.32013 | ProteinID:CAA16886.1 | ProteinID:CAB79649.1 |
| GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008540 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0030163 | GO:GO:0030234 | GO:GO:0034515 | GO:GO:0042176 | GO:GO:0043161 | GO:GO:0050790 |
| InterPro:IPR011989 | RefSeq:NP_194576.5 | PFAM:PF01851 | PIRSF:PIRSF015965 | PO:PO:0000018 | PO:PO:0000293 |
| PO:PO:0009009 | PO:PO:0009046 | PO:PO:0009062 | PO:PO:0009066 | PO:PO:0009089 | PANTHER:PTHR10943 |
| PANTHER:PTHR10943:SF8 | InterPro:Proteasome/cyclosome_rpt | UniProt:Q6XJG8 | Symbol:RPN1B | SUPFAM:SSF48371 | UniParc:UPI000024215A |
| SEG:seg | : | : | : | : | : |
Description
RPN1B26S proteasome non-ATPase regulatory subunit 2 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q6XJG8]
Coordinates
chr4:-:14066731..14072582
Molecular Weight (calculated)
97960.2 Da
IEP (calculated)
4.842
GRAVY (calculated)
-0.072
Length
891 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPVPDPNSV GGGAKRDEAT TKIPSKDSKK KDDKKEEDLS EEDLQLKQNL ELYVERVQDP NPELQKIALE SMRKEIRDST SSMTSVPKPL KFLRPHYGVL
101: KEFHAKMAES DLKKMLADIL SVLALTMSAE GERESLNYRL NGSESDIGSW GHEYVRNLAG EIAKEYTIRQ GEESSIEDLM DLVQQIVSFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDNTN FRRTCNYLTS AAKYLPGPDD MLVLDIAYMI YIKFAEYPNA LQIALFLDNM QYVKQVFTSC TDLVKKKQFC YMIARHGMTF
301: ELDQEMVAND EDKEALQDIV NNSKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG PSVDSARQNL SATFVNAFVN AGFGQDKLMT VPSDSTSGSA
401: GNWLFKNKEH GKTSAVASLG MIQLWDVETG LGHLDKYFHS NDNPVVAGAL LGVGIVNCGI KNDCDPAFAL LSGYIDNEDS SVRIGAIMGL GIAYAGSQND
501: QIKIRLSPIL NDANAPLDVI AFAALSLGMI YVGSCNEEVA QSIIFALMDR SEAELGEALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLVKGDI HQGPAVIGLA MVAMSEELGL DMEIRSLERV LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMAAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDASL LFCVRIAQGF VHMGKGLLTL NPFHSERLLL SPTALAGIVT LLHACLDMKS IILGKYHYVL
801: YFLVLAMQPR MMLTVDQSLK PISVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATEKYI PLSPILEGFV ILKENPDYRE E
101: KEFHAKMAES DLKKMLADIL SVLALTMSAE GERESLNYRL NGSESDIGSW GHEYVRNLAG EIAKEYTIRQ GEESSIEDLM DLVQQIVSFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDNTN FRRTCNYLTS AAKYLPGPDD MLVLDIAYMI YIKFAEYPNA LQIALFLDNM QYVKQVFTSC TDLVKKKQFC YMIARHGMTF
301: ELDQEMVAND EDKEALQDIV NNSKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG PSVDSARQNL SATFVNAFVN AGFGQDKLMT VPSDSTSGSA
401: GNWLFKNKEH GKTSAVASLG MIQLWDVETG LGHLDKYFHS NDNPVVAGAL LGVGIVNCGI KNDCDPAFAL LSGYIDNEDS SVRIGAIMGL GIAYAGSQND
501: QIKIRLSPIL NDANAPLDVI AFAALSLGMI YVGSCNEEVA QSIIFALMDR SEAELGEALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLVKGDI HQGPAVIGLA MVAMSEELGL DMEIRSLERV LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMAAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDASL LFCVRIAQGF VHMGKGLLTL NPFHSERLLL SPTALAGIVT LLHACLDMKS IILGKYHYVL
801: YFLVLAMQPR MMLTVDQSLK PISVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATEKYI PLSPILEGFV ILKENPDYRE E
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.