Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05774 | Canola | cytosol | 94.84 | 94.31 |
| CDY31952 | Canola | plasma membrane | 88.78 | 92.41 |
| AT4G28470.1 | Thale cress | cytosol | 90.68 | 90.68 |
| Bra036488.1-P | Field mustard | cytosol, extracellular, plasma membrane | 84.4 | 90.28 |
| VIT_12s0028g03130.t01 | Wine grape | cytosol | 85.19 | 85.28 |
| Solyc07g053650.2.1 | Tomato | nucleus | 77.55 | 84.06 |
| PGSC0003DMT400024306 | Potato | cytosol | 83.28 | 82.81 |
| AT4G08140.1 | Thale cress | cytosol | 7.52 | 79.76 |
| GSMUA_Achr11P... | Banana | cytosol | 75.76 | 76.01 |
| TraesCS6A01G116500.1 | Wheat | golgi, unclear | 74.75 | 74.41 |
| TraesCS6D01G105500.1 | Wheat | golgi | 74.75 | 74.41 |
| HORVU6Hr1G021020.1 | Barley | cytosol | 74.75 | 74.16 |
| Os02t0146700-02 | Rice | plasma membrane | 74.41 | 73.83 |
| TraesCS6B01G144500.1 | Wheat | cytosol | 74.64 | 73.56 |
| Zm00001d053881_P001 | Maize | mitochondrion, plastid | 73.51 | 73.43 |
| EES04513 | Sorghum | cytosol | 73.51 | 73.27 |
| Zm00001d015259_P001 | Maize | cytosol | 72.95 | 73.03 |
| Os09t0326800-01 | Rice | plasma membrane | 71.6 | 71.6 |
| Os06t0699900-01 | Rice | plasma membrane | 72.05 | 71.25 |
| Solyc10g008180.1.1 | Tomato | plastid | 57.13 | 69.63 |
| KRH57774 | Soybean | endoplasmic reticulum, plasma membrane | 21.21 | 64.73 |
| TraesCS7A01G421600.1 | Wheat | mitochondrion | 54.55 | 59.49 |
| TraesCS7B01G322000.1 | Wheat | cytosol | 58.59 | 59.32 |
| TraesCS7B01G321900.1 | Wheat | cytosol | 57.46 | 59.05 |
| TraesCS7D01G413900.1 | Wheat | mitochondrion | 54.99 | 58.97 |
| TraesCS7A01G421700.1 | Wheat | cytosol | 57.8 | 58.52 |
| TraesCS7D01G413800.1 | Wheat | cytosol | 38.05 | 54.68 |
| HORVU7Hr1G097500.16 | Barley | endoplasmic reticulum, golgi, plasma membrane | 30.98 | 47.1 |
| GSMUA_Achr1P10580_001 | Banana | cytosol, nucleus, plasma membrane | 2.92 | 17.93 |
| AT2G32730.1 | Thale cress | cytosol | 16.84 | 14.94 |
| AT1G04810.1 | Thale cress | cytosol | 16.27 | 14.49 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.6.2.2.1 | InterPro:26S_Psome_Rpn1 | EntrezGene:816580 | UniProt:A0A178VZC8 | ProteinID:AAD21708.2 |
| ProteinID:AEC07032.1 | EMBL:AF360216 | EMBL:AK220903 | InterPro:ARM-like | InterPro:ARM-type_fold | ArrayExpress:AT2G20580 |
| EnsemblPlantsGene:AT2G20580 | RefSeq:AT2G20580 | TAIR:AT2G20580 | RefSeq:AT2G20580-TAIR-G | EnsemblPlants:AT2G20580.1 | TAIR:AT2G20580.1 |
| EMBL:AY040061 | EMBL:AY230828 | Unigene:At.22879 | GO:GO:0000502 | GO:GO:0002376 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004175 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006950 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008540 | GO:GO:0009056 | GO:GO:0009506 |
| GO:GO:0009719 | GO:GO:0009751 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0030163 | GO:GO:0030234 | GO:GO:0034515 | GO:GO:0042176 | GO:GO:0043130 | GO:GO:0043161 |
| GO:GO:0045087 | GO:GO:0050790 | GO:GO:0051726 | InterPro:IPR011989 | RefSeq:NP_565477.1 | ProteinID:OAP11627.1 |
| PFAM:PF01851 | PIRSF:PIRSF015965 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000018 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000229 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0009089 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR10943 | PANTHER:PTHR10943:SF8 | InterPro:Proteasome/cyclosome_rpt | UniProt:Q9SIV2 | Symbol:RPN1A |
| SUPFAM:SSF48371 | UniParc:UPI00000AB63A | SEG:seg | : | : | : |
Description
RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
Coordinates
chr2:+:8858962..8864865
Molecular Weight (calculated)
98150.1 Da
IEP (calculated)
4.718
GRAVY (calculated)
-0.116
Length
891 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.