Subcellular Localization
min:
: max
Winner_takes_all: golgi, unclear
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
unclear: 25769308 |
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G105500.1 | Wheat | golgi | 99.89 | 99.89 |
| TraesCS6B01G144500.1 | Wheat | cytosol | 99.78 | 98.78 |
| HORVU6Hr1G021020.1 | Barley | cytosol | 99.11 | 98.78 |
| Zm00001d053881_P001 | Maize | mitochondrion, plastid | 92.29 | 92.6 |
| Os02t0146700-02 | Rice | plasma membrane | 92.85 | 92.54 |
| EES04513 | Sorghum | cytosol | 92.4 | 92.51 |
| Zm00001d015259_P001 | Maize | cytosol | 91.4 | 91.91 |
| GSMUA_Achr11P... | Banana | cytosol | 81.56 | 82.21 |
| Solyc07g053650.2.1 | Tomato | nucleus | 72.85 | 79.32 |
| VIT_12s0028g03130.t01 | Wine grape | cytosol | 77.43 | 77.87 |
| PGSC0003DMT400024306 | Potato | cytosol | 77.32 | 77.23 |
| KRH55899 | Soybean | endoplasmic reticulum, nucleus | 75.64 | 76.5 |
| KRH25643 | Soybean | endoplasmic reticulum, nucleus | 75.31 | 76.16 |
| AT2G20580.1 | Thale cress | cytosol | 74.41 | 74.75 |
| CDY38389 | Canola | cytosol, extracellular | 74.41 | 74.66 |
| Bra011030.1-P | Field mustard | cytosol | 74.08 | 74.41 |
| CDY35187 | Canola | cytosol, extracellular | 74.08 | 74.33 |
| Bra024200.1-P | Field mustard | cytosol | 73.85 | 74.19 |
| CDY29907 | Canola | extracellular | 73.74 | 74.07 |
| CDX92875 | Canola | extracellular | 73.74 | 74.07 |
| CDY05774 | Canola | cytosol | 74.08 | 74.0 |
| AT4G28470.1 | Thale cress | cytosol | 72.85 | 73.18 |
| CDY31952 | Canola | plasma membrane | 68.72 | 71.85 |
| Bra036488.1-P | Field mustard | cytosol, extracellular, plasma membrane | 66.15 | 71.07 |
| CDX97442 | Canola | cytosol | 67.49 | 68.4 |
| Bra010366.1-P | Field mustard | cytosol | 67.71 | 68.4 |
| CDY14239 | Canola | cytosol, extracellular | 67.6 | 68.13 |
| TraesCS7A01G421600.1 | Wheat | mitochondrion | 61.68 | 67.56 |
| TraesCS7A01G421700.1 | Wheat | cytosol | 66.26 | 67.39 |
| Solyc10g008180.1.1 | Tomato | plastid | 54.53 | 66.76 |
| AT4G08140.1 | Thale cress | cytosol | 6.03 | 64.29 |
| KRH57774 | Soybean | endoplasmic reticulum, plasma membrane | 20.45 | 62.67 |
| PGSC0003DMT400056260 | Potato | cytosol | 12.07 | 60.0 |
| Solyc10g008170.2.1 | Tomato | cytosol | 12.96 | 57.43 |
| KRH57675 | Soybean | cytosol | 18.77 | 55.45 |
| CDY72396 | Canola | cytosol | 8.6 | 53.47 |
| CDX99107 | Canola | cytosol | 11.62 | 40.15 |
| KRH30269 | Soybean | cytosol | 8.6 | 37.56 |
| CDY33144 | Canola | extracellular | 12.4 | 35.46 |
| CDY65736 | Canola | extracellular | 13.52 | 29.8 |
| GSMUA_Achr1P10580_001 | Banana | cytosol, nucleus, plasma membrane | 3.35 | 20.69 |
| Bra003811.1-P | Field mustard | endoplasmic reticulum | 4.58 | 16.67 |
| TraesCS1A01G348400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 14.64 | 13.92 |
| TraesCS2A01G430100.2 | Wheat | golgi | 15.42 | 13.27 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.6.2.2.1 | InterPro:26S_Psome_Rpn1 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0000502 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:0042176 | InterPro:IPR011989 |
| PFAM:PF01851 | PIRSF:PIRSF015965 | PANTHER:PTHR10943 | PANTHER:PTHR10943:SF8 | InterPro:Proteasome/cyclosome_rpt | SUPFAM:SSF48371 |
| EnsemblPlantsGene:TraesCS6A01G116500 | EnsemblPlants:TraesCS6A01G116500.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6A:+:87242950..87249486
Molecular Weight (calculated)
97779.9 Da
IEP (calculated)
4.848
GRAVY (calculated)
-0.034
Length
895 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPPENPNGG AAAAAPSEPA PPAKPSSSKG KKKDDKKDDD LSEEDLALKE QLELYVVRAQ DVDPGVQRLA LESMRQEIRS ATSSMTSVPK PLKFLRPHYG
101: TLKSYYETMP ESELKKYMAD ILSVLALTMS AEGERESLRY RLLGSEGDIG SWGHEYVRNL AGEIAQEFQK RQGDDMPIDE LMELVQQIVS FHMKHNAEPE
201: AVDLLMEVED LDLLVEHVDS TNYKRTCLYL TSSSRFLPSP DDTLALDIAY TIYMKFEDLA SALRIALLLD NKSIQYVKQV YTATDDLVLK KQFSYIIARH
301: GLAMEIDDEI AADENDKEML QEIVNNTKLS EGYLTLARDI EVMEAKSPED IYKVHLIDGR GASSSLDSAR QNLAATFVNA FVNAGFGQDK LMTAPSDSSS
401: SGSSGNWLFK NKEHGKASAA ASLGMILLWD TDSGLAQLDK YLHSTDTHVV AGALLGIGVV TCGVKNDCDP ALAILMEYVN KDDSNIRIGA ILGLGIAYAG
501: SQKDELRVQL SAILGDPQAT LEVLVFTAVA LGLVFVGSCN EEIAQSIIFF LMERSEAELA EPIIRLLPVA LGLLYLGKQE SVEATAEVSK TFDEKIRKYC
601: DVTLMSLAYA GTGNVLKVQK LLGICSQHLE KGETHQGPAV LGIALIAMSE ELGAEMAVRS LERLLQYGEQ NIRRAVPLAL GILCISNPKV NVMDTLSRLS
701: HDADADVSMA AIISLGLIGA GTNNARIAGM LRNLSSYYYK EAAHLFCVRI AQGLVHLGKG LLTLSPYHSD RFLLSPMALG GIVTVLHACL DMKSTILGKY
801: HYILYIIVLA MQPRMLLTVD EDLKPLPVPV RVGQAVDVVG QAGRPKTITG FQTHTTPVLL AAGERAELAT DKYIPLTSTL EGFVILKKNP EYHEE
101: TLKSYYETMP ESELKKYMAD ILSVLALTMS AEGERESLRY RLLGSEGDIG SWGHEYVRNL AGEIAQEFQK RQGDDMPIDE LMELVQQIVS FHMKHNAEPE
201: AVDLLMEVED LDLLVEHVDS TNYKRTCLYL TSSSRFLPSP DDTLALDIAY TIYMKFEDLA SALRIALLLD NKSIQYVKQV YTATDDLVLK KQFSYIIARH
301: GLAMEIDDEI AADENDKEML QEIVNNTKLS EGYLTLARDI EVMEAKSPED IYKVHLIDGR GASSSLDSAR QNLAATFVNA FVNAGFGQDK LMTAPSDSSS
401: SGSSGNWLFK NKEHGKASAA ASLGMILLWD TDSGLAQLDK YLHSTDTHVV AGALLGIGVV TCGVKNDCDP ALAILMEYVN KDDSNIRIGA ILGLGIAYAG
501: SQKDELRVQL SAILGDPQAT LEVLVFTAVA LGLVFVGSCN EEIAQSIIFF LMERSEAELA EPIIRLLPVA LGLLYLGKQE SVEATAEVSK TFDEKIRKYC
601: DVTLMSLAYA GTGNVLKVQK LLGICSQHLE KGETHQGPAV LGIALIAMSE ELGAEMAVRS LERLLQYGEQ NIRRAVPLAL GILCISNPKV NVMDTLSRLS
701: HDADADVSMA AIISLGLIGA GTNNARIAGM LRNLSSYYYK EAAHLFCVRI AQGLVHLGKG LLTLSPYHSD RFLLSPMALG GIVTVLHACL DMKSTILGKY
801: HYILYIIVLA MQPRMLLTVD EDLKPLPVPV RVGQAVDVVG QAGRPKTITG FQTHTTPVLL AAGERAELAT DKYIPLTSTL EGFVILKKNP EYHEE
001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
Arabidopsis Description
RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.