CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25643	Soybean	endoplasmic reticulum, nucleus	99.1	99.1
Solyc07g053650.2.1	Tomato	nucleus	81.24	87.47
VIT_12s0028g03130.t01	Wine grape	cytosol	87.8	87.3
PGSC0003DMT400024306	Potato	cytosol	85.65	84.6
GSMUA_Achr11P...	Banana	cytosol	79.21	78.94
Zm00001d053881_P001	Maize	mitochondrion, plastid	77.51	76.91
Os02t0146700-02	Rice	plasma membrane	77.97	76.84
EES04513	Sorghum	cytosol	77.4	76.62
Zm00001d015259_P001	Maize	cytosol	76.72	76.29
TraesCS6D01G105500.1	Wheat	golgi	76.5	75.64
TraesCS6A01G116500.1	Wheat	golgi, unclear	76.5	75.64
HORVU6Hr1G021020.1	Barley	cytosol	76.5	75.39
Os09t0326800-01	Rice	plasma membrane	75.37	74.86
TraesCS6B01G144500.1	Wheat	cytosol	76.38	74.78
Os06t0699900-01	Rice	plasma membrane	75.71	74.36
KRH57774	Soybean	endoplasmic reticulum, plasma membrane	24.07	72.95
Solyc10g008180.1.1	Tomato	plastid	59.89	72.5
KRH57675	Soybean	cytosol	23.39	68.32
TraesCS7B01G322000.1	Wheat	cytosol	60.79	61.14
TraesCS7D01G413900.1	Wheat	mitochondrion	57.4	61.13
TraesCS7A01G421600.1	Wheat	mitochondrion	56.16	60.83
TraesCS7B01G321900.1	Wheat	cytosol	59.32	60.55
TraesCS7A01G421700.1	Wheat	cytosol	59.89	60.23
TraesCS7D01G413800.1	Wheat	cytosol	40.0	57.1
HORVU7Hr1G097500.16	Barley	endoplasmic reticulum, golgi, plasma membrane	31.53	47.61
KRH30269	Soybean	cytosol	10.73	46.34
GSMUA_Achr1P10580_001	Banana	cytosol, nucleus, plasma membrane	2.94	17.93
KRH41754	Soybean	nucleus	17.63	15.51
KRH60454	Soybean	endoplasmic reticulum	17.51	15.41
KRH30250	Soybean	cytosol	2.03	14.63

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100799779	MapMan:19.2.6.2.2.1	InterPro:26S_Psome_Rpn1	EMBL:ACUP02004067	InterPro:ARM-like
InterPro:ARM-type_fold	EnsemblPlantsGene:GLYMA_06G289400	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0008540	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	GO:GO:0030234	GO:GO:0034515	GO:GO:0042176
GO:GO:0043161	GO:GO:0050790	UniProt:I1KEY6	InterPro:IPR011989	EnsemblPlants:KRH55899	ProteinID:KRH55899
ProteinID:KRH55899.1	PFAM:PF01851	PIRSF:PIRSF015965	PANTHER:PTHR10943	PANTHER:PTHR10943:SF8	InterPro:Proteasome/cyclosome_rpt
SUPFAM:SSF48371	UniParc:UPI000233A485	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:47813611..47821189

Molecular Weight (calculated)

97354.1 Da

IEP (calculated)

4.811

GRAVY (calculated)

-0.096

Length

885 amino acids

Sequence
(BLAST)

001: MAPDPNRAGT SASANAAKDD AVTKKKVENE DLSDEDLALK QQLELYVERV QDPDQGLQKV ALESMRQEIR TSTSSMTSVP KPLKFLRPHY GTLKTYYETM
101: VESDLKKYLA DILSVLALTM SAEGERESLK YRLLGSEGDI GSWGHEYVRN LAGEIAQEYT KRQSEEAPID DLMELVQQIV AFHMKHNAEP EAVDLLMEVE
201: DLDMLSGHVD KTNFKRTCLY LTSSARYLPG PDDMLVLDIA YSIYKQFEEY PNALQIALFM DNSQHVREVF TSCNDVLRKK QFCYMLARHG ITFELDEEMV
301: PDDEDRELLQ EIINNSKLSE GYLTLARDIE VMEPKSPEDI YKAHLLDGRA SAGASVDSAR QNLAATFVNA FVNAGFGQDK LMTVPSDSSS SASSGNWLFK
401: NKEHGKTSAA ASLGMILLWD VDSGLAQIDK YFHSNDNHVI AGALLGVGIV NCSIKNDCDP AMALLGDYID KEDTSIRIGA IMGLGIAYAG SQNEQLREKL
501: TGVLNDSKAS LEVLAFAAIS LGLIYVGSCN EEIAQAIIYT LMDRSESELG EPLTRLLPLG LGLLYLGKQD SVEATAEVSK TFNEKIRKYC DMTLLSCAYA
601: GTGNVLKVQN LLGHCSQHLD KGETHQGPAV LGIAMVAMAE ELGLEMAIRS LEHLLQYGEQ NIRRAVPLAL GLLCISNPKV NVMDTLSRLS HDTDSEVAMA
701: AVISLGLIGA GTNNARIAGM LRNLSSYYYK DTSLLFCVRI AQGLVHLGKG LLTLNPYHSD RFLLSPTALA GLITMLHACL DMKAIVLGKY HYVLYFLVLA
801: MQPRMLLTVD ENLKPLSVPV RVGQAVDVVG QAGRPKTITG FQTHSTPVLL AAGDRAELAT EKYIPLSPIL EGFVILKENP DYREE

Best Arabidopsis Sequence Match ( AT2G20580.1 )
(BLAST)

001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E

Arabidopsis Description

RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.