CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60454	Soybean	endoplasmic reticulum	97.61	97.61
AT2G32730.1	Thale cress	cytosol	84.79	84.96
CDX79472	Canola	cytosol, plastid	83.2	83.78
CDY12178	Canola	cytosol	82.41	83.57
Bra022899.1-P	Field mustard	cytosol, plastid	83.2	83.37
CDY19162	Canola	extracellular	83.2	83.37
CDY23791	Canola	cytosol, plastid	83.5	83.33
CDX84724	Canola	cytosol, plastid	83.2	83.28
Bra021810.1-P	Field mustard	cytosol, plastid	83.1	83.27
Bra005560.1-P	Field mustard	plastid	83.2	83.04
PGSC0003DMT400040763	Potato	cytosol	81.91	82.98
AT1G04810.1	Thale cress	cytosol	82.41	82.82
Solyc05g053650.2.1	Tomato	endoplasmic reticulum	81.51	82.58
CDY60623	Canola	endoplasmic reticulum, golgi	79.13	82.15
PGSC0003DMT400076219	Potato	endoplasmic reticulum	81.91	82.07
Solyc09g091750.2.1	Tomato	plastid	81.71	81.87
GSMUA_Achr1P10550_001	Banana	cytosol	79.32	78.93
KXG27072	Sorghum	plasma membrane	77.04	76.88
Os08t0224700-01	Rice	plasma membrane	74.06	75.48
Os04t0608500-01	Rice	plasma membrane	23.06	75.32
Zm00001d026265_P002	Maize	plasma membrane	76.34	75.15
EES13543	Sorghum	endoplasmic reticulum	72.86	74.19
Zm00001d049357_P001	Maize	plasma membrane	72.66	73.99
Zm00001d024342_P001	Maize	plasma membrane	72.47	73.56
Zm00001d002373_P006	Maize	cytosol, plasma membrane	73.66	73.51
VIT_00s0125g00350.t01	Wine grape	cytosol	13.42	72.97
TraesCS2D01G427700.2	Wheat	endoplasmic reticulum, plasma membrane	74.45	72.65
TraesCS2A01G430100.2	Wheat	golgi	75.05	72.6
HORVU1Hr1G081810.8	Barley	cytosol, plasma membrane	68.99	72.59
TraesCS2B01G450800.2	Wheat	cytosol, endoplasmic reticulum	74.06	72.33
TraesCS1A01G348400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	67.59	72.26
TraesCS1B01G363000.1	Wheat	cytosol	70.58	70.86
TraesCS1D01G351400.1	Wheat	cytosol, endoplasmic reticulum	70.18	70.46
KRH55899	Soybean	endoplasmic reticulum, nucleus	15.51	17.63
KRH25643	Soybean	endoplasmic reticulum, nucleus	15.31	17.4
KRH57774	Soybean	endoplasmic reticulum, plasma membrane	4.37	15.07
KRH57675	Soybean	cytosol	4.37	14.52
KRH30269	Soybean	cytosol	2.58	12.68
KRH30250	Soybean	cytosol	0.89	7.32

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100817941	MapMan:19.2.6.2.2.2	InterPro:26S_Psome_Rpn2	EMBL:ACUP02004779	InterPro:ARM-like
InterPro:ARM-type_fold	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G048800	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824
GO:GO:0004175	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0008540	GO:GO:0009056
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	GO:GO:0030234
GO:GO:0034515	GO:GO:0042176	GO:GO:0043161	GO:GO:0050790	UniProt:I1KQE8	InterPro:IPR011989
EnsemblPlants:KRH41754	ProteinID:KRH41754	ProteinID:KRH41754.1	PFAM:PF01851	PFAM:PF13646	PIRSF:PIRSF015947
PANTHER:PTHR10943	PANTHER:PTHR10943:SF10	InterPro:Proteasome/cyclosome_rpt	SUPFAM:SSF48371	TMHMM:TMhelix	UniParc:UPI0002337F59
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:3799111..3805880

Molecular Weight (calculated)

109540.0 Da

IEP (calculated)

5.012

GRAVY (calculated)

-0.161

Length

1006 amino acids

Sequence
(BLAST)

0001: MATTLVSSAG GMLAMLNEPH LSLKLHALSN LNNLVDTFWP EISTSLPKIE SLHEDEEFDQ HQRQLAALLV SKVFYYLGEL NDSLSYALGA GPLFDVSEDS
0101: DYVHTLLAKA IDEYASLKSK AAESSDESIK MDPRLEAIVE RLLDKCIVDG KYQQAMGTAI ECRRLDKLEE AITRSDNVQG TLSYCIYVSH SFVNLREYRQ
0201: EVLRLLVKVF QKLPSPDYLS ICQCLMFLDE SEGVASKLEK LLRSENKDDA LLAFQIAFDL VENEHQAFLL NVRDRLAPPK SQPSESSQPK PSETASTQNA
0301: SASGQDDVQM ADDDSAPMVN VPEDPIETMY AERLNKIRGI LSGETSIQLT LQFLYSHNKS DLLILKTIKQ SVEMRNSVCH SATIYANAIM HAGTTVDTFL
0401: RENLDWLSRA TNWAKFSATA GLGVIHRGHL QQGRSLMAPY LPQGGTGAGG SPYSEGGALY ALGLIHANHG EGIKQFLRDS LRSTTVEVIQ HGACLGLGLA
0501: SLGTADEDIY EEIKNVLYTD SAVAGEAAGI SMGLLMVGTG SEKANEMLTY AHETQHEKII RGLALGIALT VYGREEEADT LIEQMTRDQD PILRYGGMYA
0601: LALAYRGTAN NKAIRQLLHF AVSDVSDDVR RTAVLALGFV LYSDPEQTPR IVSLLSESYN PHVRYGAALA VGISCAGTGL SEAISLLEPL TSDVVDFVRQ
0701: GALIAMAMVM VQISEASDSR VGTFRRQLEK IILDKHEDTM SKMGAILASG ILDAGGRNVT IRLLSKTKHD KITAVVGLAV FSQFWYWYPL IYFISLSFSP
0801: TAFIGLNYDL KSPKFEFLSH AKPSLFEYPK PTTVPTTTST VKLPTAVLST SAKAKARAKK AEEQKANAEI SSAPDSASAV PSGGKGKSSG EKDGDSMQVD
0901: SPTTEKKSEP EPSFEILTNP ARVVPAQEKF IKFLQDSRYV PVKLAPSGFV LLKDLRPTEP EVLALTDTPS STTSAAGGSA TGLQSSSSAM AVDEEPQPPQ
1001: PFEYTS

Best Arabidopsis Sequence Match ( AT2G32730.1 )
(BLAST)

0001: MATPMVSSAG GLLAMLNEPH PVLKLHALSN LNNLVDQFWP EISTSVPIIE SLYEDEEFDL HQRQLAALLV SKVFYYLGEL NDSLSYALGA GPLFDVSEDS
0101: DYVHTLLAKA IDEYASLRSK AVESNEMVDI DPRLEAIVER MLGKCISDGK YQQAMGIAIE CRRLDKLEEA IIKSDNVQGT LSYCINVSHS FVNRREYRHE
0201: VLSLLVKVYQ KLPSPDYLSI CQCLMFLDEP QGVASILEKL LRSENKDDAL LALQIAFDLV ENEHQAFLLS VRDRLPAPKT RAVEATQAVE TTIAPNENPS
0301: GDVQMADETP AQTIVHETDP VDATYAERLT KIKGILSGET SIQLTLQFLY SHNKSDLLIL KTIKQSVEMR NSVCHSATIY ANAIMHAGTT VDTFLRENLD
0401: WLSRATNWAK FSATAGLGVI HRGHLQQGRS LMAPYLPQGG AGGGGSPYSE GGALYALGLI HANHGEGIKQ FLRDSLRSTN VEVIQHGACL GLGLSALGTA
0501: DEEIYDDVKS VLYTDSAVAG EAAGISMGLL LVGTATEKAS EMLAYAHETQ HEKIIRGLAL GIALTVYGRE EGADTLIEQM TRDQDPIIRY GGMYALALAY
0601: SGTANNKAIR QLLHFAVSDV SDDVRRTAVL ALGFVLYSDP EQTPRIVSLL SESYNPHVRY GAALAVGISC AGTGLSEAIS LLEPLTSDVV DFVRQGALIA
0701: MAMVMVQISE ASDSRVGVFR RQLEKIILDK HEDTMSKMGA ILASGILDAG GRNVTIRLLS KTKHDKVTAV IGLAVFSQFW YWYPLIYFIS LAFSPTAFIG
0801: LNYDLKVPKF EFMSHAKPSL FEYPKPTTVP TANTAVKLPT AVLSTSVKAK ARAKKEAEQK AIAEKTSGPE KPVNESGSGK GKASTEKEGD SMQVDSPAAV
0901: EKKAPEPEPA FEILVNPARV VPAQEKYIKL LDDSRYVPVK LAPSGFVLLK DLREHEPEVL SLTDAPTSTA SPATGTAAAA QGTPASAMAV DDEPQPPQAF
1001: EYAS

Arabidopsis Description

RPN2A26S proteasome non-ATPase regulatory subunit 1 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O48844]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.