Factsheet for Os08t0224700-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 3
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13543	Sorghum	endoplasmic reticulum	85.82	85.73
Zm00001d024342_P001	Maize	plasma membrane	82.57	82.24
Zm00001d049357_P001	Maize	plasma membrane	82.27	82.19
Os04t0608500-01	Rice	plasma membrane	25.23	80.84
GSMUA_Achr1P10550_001	Banana	cytosol	77.51	75.67
VIT_00s0215g00040.t01	Wine grape	extracellular	48.83	75.31
VIT_10s0042g00800.t01	Wine grape	cytosol, plastid	76.49	75.12
KRH60454	Soybean	endoplasmic reticulum	75.48	74.06
KRH41754	Soybean	nucleus	75.48	74.06
AT2G32730.1	Thale cress	cytosol	75.18	73.9
CDY12178	Canola	cytosol	74.16	73.79
CDY19162	Canola	extracellular	74.47	73.21
CDX79472	Canola	cytosol, plastid	74.06	73.17
CDX84724	Canola	cytosol, plastid	74.47	73.13
CDY23791	Canola	cytosol, plastid	74.67	73.12
Bra021810.1-P	Field mustard	cytosol, plastid	74.37	73.11
AT1G04810.1	Thale cress	cytosol	74.06	73.03
Bra022899.1-P	Field mustard	cytosol, plastid	74.27	73.01
Bra005560.1-P	Field mustard	plastid	74.37	72.82
PGSC0003DMT400076219	Potato	endoplasmic reticulum	73.45	72.21
PGSC0003DMT400040763	Potato	cytosol	72.64	72.21
Solyc09g091750.2.1	Tomato	plastid	73.35	72.11
Solyc05g053650.2.1	Tomato	endoplasmic reticulum	72.34	71.9
CDY60623	Canola	endoplasmic reticulum, golgi	70.31	71.62
VIT_00s0125g00350.t01	Wine grape	cytosol	13.27	70.81
VIT_00s0215g00050.t01	Wine grape	cytosol	20.16	66.33
Os09t0326800-01	Rice	plasma membrane	14.49	16.05
Os02t0146700-02	Rice	plasma membrane	14.49	15.92
Os06t0699900-01	Rice	plasma membrane	14.29	15.65

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.6.2.2.2	InterPro:26S_Psome_Rpn2	EntrezGene:4344971	EMBL:AK121754	InterPro:ARM-like
InterPro:ARM-type_fold	ProteinID:BAD03425.1	ProteinID:BAF23192.1	ProteinID:BAT04389.1	ProteinID:BAT04390.1	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152
GO:GO:0008540	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	GO:GO:0030234	GO:GO:0034515	GO:GO:0042176	GO:GO:0043161	GO:GO:0050790
InterPro:IPR011989	EnsemblPlantsGene:Os08g0224700	EnsemblPlants:Os08t0224700-01	PFAM:PF01851	PFAM:PF13646	PIRSF:PIRSF015947
PANTHER:PTHR10943	PANTHER:PTHR10943:SF10	InterPro:Proteasome/cyclosome_rpt	UniProt:Q6Z921	SUPFAM:SSF48371	UniParc:UPI00002260F1
RefSeq:XP_015650371.1	SEG:seg	:	:	:	:

Description

19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 2ASimilar to 26S proteasome subunit RPN2a. (Os08t0224700-01);Similar to predicted protein. (Os08t0224700-02)

Coordinates

chr8:+:7591562..7596941

Molecular Weight (calculated)

106971.0 Da

IEP (calculated)

4.886

GRAVY (calculated)

-0.099

Length

987 amino acids

Sequence
(BLAST)

001: MAAAAVMVSS ASGLLAMLQE PAAELKLHAL ANLNSLVHVF WPEISTSVPA IESLYEDEEF DQRQLAALVV SKVFYYLGEL DDSLSYALGA GPLFDPSEGS
101: DYAQTLLAKA LDEYASIRSK SLKAAGEGDE KMDPRLEAIV ERMLDKCILD GKYQQAMGMS LECKRLDKLE EAISRSDNLN GSLSYSIILS HQYVSHREYR
201: CEILRCLVKI YQTLPNPDYL SICQCLMFLG EPETVGNILG KLLSGSKDDA LLAFQIAFDL VENENQAFLL NVKNHLDTLS LQTSAQTLPS DQTAATEPSG
301: DAQMTDDAIT PNGNAHTVDP NEVAHADRLT KIKGILSGET SIQLTLQFLY SHNRSDLLIL KTIKQALEMR NSVCHSATIC SNAIMHAGTT VDTFLRENLE
401: WLSRATNWAK FSATAGLGVI HRGHLTQGRA LMAPYLPQSG AASGGSPYSE GGALYALGLI HANHGEGIKQ FLRESLRNTS SEVVQHGACL GLGLAALGTA
501: DEEIFEDVKN ILYTDSAVAG EAAGIGMGLL MAGTASEKAG EMLAYAHDTQ HEKIIRGLSL GIALTVYGRE EEADTLIEQM TRDQDPILRY GGMYALALAY
601: RGTANNKAIH QLLHFAVSDV SDDVRRTAVL ALGFVLYNEP EQTPRIVSLL SESYNPHVRY GAALAVGISC AGTGLSDAIS LLEPLTSDVV DFVRQGALIA
701: MAMVMIQTNE SYDSRVGTFR RQLEKIILDK HEDTMSKMGA IMATGILDAG GRNVTIRLQS RSKHDKLTAV VGLAVFTQFW YWYPLTYFIS LAFSPTAFIG
801: LNSDLKVPKF EFLSNTKPSL FDYPKPTTQQ TTTASVKLPT AILSTYAKAK SRAKKEAESK AQEKAEAPPS EDASTSMQVD GVAEKKAPEP EPTFQILTNP
901: ARVVPAQEKF IKFLEGGRYE PVKLAPSGFV LLRDLKPTET EELVLTDAPA TQATNAAAAT AGQQGSGAAA MAVDEEPLPP QPFEYTS

Best Arabidopsis Sequence Match ( AT2G32730.1 )
(BLAST)

0001: MATPMVSSAG GLLAMLNEPH PVLKLHALSN LNNLVDQFWP EISTSVPIIE SLYEDEEFDL HQRQLAALLV SKVFYYLGEL NDSLSYALGA GPLFDVSEDS
0101: DYVHTLLAKA IDEYASLRSK AVESNEMVDI DPRLEAIVER MLGKCISDGK YQQAMGIAIE CRRLDKLEEA IIKSDNVQGT LSYCINVSHS FVNRREYRHE
0201: VLSLLVKVYQ KLPSPDYLSI CQCLMFLDEP QGVASILEKL LRSENKDDAL LALQIAFDLV ENEHQAFLLS VRDRLPAPKT RAVEATQAVE TTIAPNENPS
0301: GDVQMADETP AQTIVHETDP VDATYAERLT KIKGILSGET SIQLTLQFLY SHNKSDLLIL KTIKQSVEMR NSVCHSATIY ANAIMHAGTT VDTFLRENLD
0401: WLSRATNWAK FSATAGLGVI HRGHLQQGRS LMAPYLPQGG AGGGGSPYSE GGALYALGLI HANHGEGIKQ FLRDSLRSTN VEVIQHGACL GLGLSALGTA
0501: DEEIYDDVKS VLYTDSAVAG EAAGISMGLL LVGTATEKAS EMLAYAHETQ HEKIIRGLAL GIALTVYGRE EGADTLIEQM TRDQDPIIRY GGMYALALAY
0601: SGTANNKAIR QLLHFAVSDV SDDVRRTAVL ALGFVLYSDP EQTPRIVSLL SESYNPHVRY GAALAVGISC AGTGLSEAIS LLEPLTSDVV DFVRQGALIA
0701: MAMVMVQISE ASDSRVGVFR RQLEKIILDK HEDTMSKMGA ILASGILDAG GRNVTIRLLS KTKHDKVTAV IGLAVFSQFW YWYPLIYFIS LAFSPTAFIG
0801: LNYDLKVPKF EFMSHAKPSL FEYPKPTTVP TANTAVKLPT AVLSTSVKAK ARAKKEAEQK AIAEKTSGPE KPVNESGSGK GKASTEKEGD SMQVDSPAAV
0901: EKKAPEPEPA FEILVNPARV VPAQEKYIKL LDDSRYVPVK LAPSGFVLLK DLREHEPEVL SLTDAPTSTA SPATGTAAAA QGTPASAMAV DDEPQPPQAF
1001: EYAS

Arabidopsis Description

RPN2A26S proteasome non-ATPase regulatory subunit 1 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O48844]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.