Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- plastid 2
- mitochondrion 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
plasma membrane: 28056797 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d053881_P001 | Maize | mitochondrion, plastid | 93.1 | 93.72 |
| EES04513 | Sorghum | cytosol | 93.1 | 93.51 |
| Zm00001d015259_P001 | Maize | cytosol | 92.32 | 93.15 |
| TraesCS6A01G116500.1 | Wheat | golgi, unclear | 92.54 | 92.85 |
| TraesCS6D01G105500.1 | Wheat | golgi | 92.43 | 92.74 |
| HORVU6Hr1G021020.1 | Barley | cytosol | 92.09 | 92.09 |
| TraesCS6B01G144500.1 | Wheat | cytosol | 92.32 | 91.7 |
| Os09t0326800-01 | Rice | plasma membrane | 85.08 | 85.75 |
| Os06t0699900-01 | Rice | plasma membrane | 85.86 | 85.57 |
| GSMUA_Achr11P... | Banana | cytosol | 82.41 | 83.33 |
| Solyc07g053650.2.1 | Tomato | nucleus | 73.5 | 80.29 |
| VIT_12s0028g03130.t01 | Wine grape | cytosol | 77.62 | 78.31 |
| PGSC0003DMT400024306 | Potato | cytosol | 78.06 | 78.24 |
| KRH55899 | Soybean | endoplasmic reticulum, nucleus | 76.84 | 77.97 |
| KRH25643 | Soybean | endoplasmic reticulum, nucleus | 76.5 | 77.63 |
| AT2G20580.1 | Thale cress | cytosol | 73.83 | 74.41 |
| Bra024200.1-P | Field mustard | cytosol | 73.5 | 74.07 |
| CDY38389 | Canola | cytosol, extracellular | 73.5 | 73.99 |
| CDY29907 | Canola | extracellular | 73.39 | 73.96 |
| CDX92875 | Canola | extracellular | 73.39 | 73.96 |
| Bra011030.1-P | Field mustard | cytosol | 73.39 | 73.96 |
| CDY35187 | Canola | cytosol, extracellular | 73.39 | 73.88 |
| AT4G28470.1 | Thale cress | cytosol | 73.05 | 73.63 |
| CDY05774 | Canola | cytosol | 73.16 | 73.33 |
| CDY31952 | Canola | plasma membrane | 68.37 | 71.73 |
| Bra036488.1-P | Field mustard | cytosol, extracellular, plasma membrane | 65.92 | 71.07 |
| Bra010366.1-P | Field mustard | cytosol | 67.59 | 68.51 |
| CDX97442 | Canola | cytosol | 67.15 | 68.29 |
| CDY14239 | Canola | cytosol, extracellular | 67.48 | 68.24 |
| Solyc10g008180.1.1 | Tomato | plastid | 54.79 | 67.31 |
| KRH57774 | Soybean | endoplasmic reticulum, plasma membrane | 20.94 | 64.38 |
| AT4G08140.1 | Thale cress | cytosol | 6.01 | 64.29 |
| PGSC0003DMT400056260 | Potato | cytosol | 12.58 | 62.78 |
| Solyc10g008170.2.1 | Tomato | cytosol | 13.36 | 59.41 |
| KRH57675 | Soybean | cytosol | 19.15 | 56.77 |
| CDY72396 | Canola | cytosol | 8.57 | 53.47 |
| CDX99107 | Canola | cytosol | 11.58 | 40.15 |
| KRH30269 | Soybean | cytosol | 8.91 | 39.02 |
| CDY33144 | Canola | extracellular | 12.47 | 35.78 |
| CDY65736 | Canola | extracellular | 13.7 | 30.3 |
| GSMUA_Achr1P10580_001 | Banana | cytosol, nucleus, plasma membrane | 3.23 | 20.0 |
| Bra003811.1-P | Field mustard | endoplasmic reticulum | 4.68 | 17.07 |
| Os04t0608500-01 | Rice | plasma membrane | 5.35 | 15.58 |
| Os08t0224700-01 | Rice | plasma membrane | 15.92 | 14.49 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.6.2.2.1 | InterPro:26S_Psome_Rpn1 | EntrezGene:4328287 | EMBL:AK105609 | EMBL:AK121963 |
| InterPro:ARM-like | InterPro:ARM-type_fold | ProteinID:BAD13082.1 | ProteinID:BAF07793.1 | ProteinID:BAS76966.1 | GO:GO:0000502 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008540 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0030163 | GO:GO:0030234 | GO:GO:0034515 | GO:GO:0042176 | GO:GO:0043161 |
| GO:GO:0050790 | InterPro:IPR011989 | EnsemblPlantsGene:Os02g0146700 | EnsemblPlants:Os02t0146700-02 | PFAM:PF01851 | PIRSF:PIRSF015965 |
| PANTHER:PTHR10943 | PANTHER:PTHR10943:SF8 | InterPro:Proteasome/cyclosome_rpt | UniProt:Q6Z2Z3 | SUPFAM:SSF48371 | UniParc:UPI0000350421 |
| RefSeq:XP_015626471.1 | SEG:seg | : | : | : | : |
Description
Similar to predicted protein. (Os02t0146700-01);Similar to PSMD2 subunit (Fragment). (Os02t0146700-02)
Coordinates
chr2:+:2563699..2571143
Molecular Weight (calculated)
98163.4 Da
IEP (calculated)
4.850
GRAVY (calculated)
-0.054
Length
898 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPPENPNGA GPAAPSDPAQ PQPQPPAKSK WKKKDEKKDD DLSEEDLALK EQLELYVVRA QDADPGVQKL ALESMRQEIR SATSSMTSVP KPLKFLRPHY
101: GTLKSYFETM PESSDLKRYM ADILSVLALT MSAEGERESL KYRLLGSEGD IGSWGHEYVR NLAGEIAQEF QKRQDDDMPI DALMELVQQI VSFHMKHNAE
201: PEAVDLLMEV EDLDLLVEHV DSTNYKRTCL YLTSSSKYLP APDDMLALDI AYTIYMKFED LTSALRIALL LDNKSMQYVK QVYTATEDLQ LKKQFSFIIA
301: RHGLAMEIDD EIAADGNDKE GLQEIVNNSK LSEGYLTLAR DIEVMEAKSP EDIYKVHLID GRGASSSLDS ARQNLAATFV NAFVNAGFGQ DKLMTAPSDS
401: SSSGASGNWL FKNKEHGKAS AAASLGMILL WDTDSGLAQL DKYLHSNDAH VVAGALLGIG IVTCGVKNDC DPALAILMEY INKDDTNIRI GAILGLGIAY
501: AGSQKEELKS YLSTVLGDSE KSTLEVLIFS AIALGLVFVG SCNEEIAQSI IFALMERSEA ELAEPIIRLL PVALGLLYLG KQESVEATAE VSKTFDEKIR
601: KYCDVTLMSL AYAGTGNVLK VQKLLGICSQ HLEKGETHQG PAVLGIALIA MAEELGAEMA VRSLERLLQY GEQNIRRAVP LALGILCISN PKVNVMDTLS
701: RLSHDADADV SMAAIISLGF IGAGTNNARI AGMLRNLSSY YYKEAAHLFC VRIAQGLVHL GKGLLTLSPY HSDRFLLSPM ALGGLVTVLH ACLDMKSTIL
801: GKYHYILYII VLAMQPRMLL TVDEDLKPLS VPVRVGQAVD VVGQAGRPKT ITGFQTHSTP VLLAAGERAE LATEKYIPLT SVLEGFVILK KNPEYNEE
101: GTLKSYFETM PESSDLKRYM ADILSVLALT MSAEGERESL KYRLLGSEGD IGSWGHEYVR NLAGEIAQEF QKRQDDDMPI DALMELVQQI VSFHMKHNAE
201: PEAVDLLMEV EDLDLLVEHV DSTNYKRTCL YLTSSSKYLP APDDMLALDI AYTIYMKFED LTSALRIALL LDNKSMQYVK QVYTATEDLQ LKKQFSFIIA
301: RHGLAMEIDD EIAADGNDKE GLQEIVNNSK LSEGYLTLAR DIEVMEAKSP EDIYKVHLID GRGASSSLDS ARQNLAATFV NAFVNAGFGQ DKLMTAPSDS
401: SSSGASGNWL FKNKEHGKAS AAASLGMILL WDTDSGLAQL DKYLHSNDAH VVAGALLGIG IVTCGVKNDC DPALAILMEY INKDDTNIRI GAILGLGIAY
501: AGSQKEELKS YLSTVLGDSE KSTLEVLIFS AIALGLVFVG SCNEEIAQSI IFALMERSEA ELAEPIIRLL PVALGLLYLG KQESVEATAE VSKTFDEKIR
601: KYCDVTLMSL AYAGTGNVLK VQKLLGICSQ HLEKGETHQG PAVLGIALIA MAEELGAEMA VRSLERLLQY GEQNIRRAVP LALGILCISN PKVNVMDTLS
701: RLSHDADADV SMAAIISLGF IGAGTNNARI AGMLRNLSSY YYKEAAHLFC VRIAQGLVHL GKGLLTLSPY HSDRFLLSPM ALGGLVTVLH ACLDMKSTIL
801: GKYHYILYII VLAMQPRMLL TVDEDLKPLS VPVRVGQAVD VVGQAGRPKT ITGFQTHSTP VLLAAGERAE LATEKYIPLT SVLEGFVILK KNPEYNEE
001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
Arabidopsis Description
RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.