Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
28052459
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35187 | Canola | cytosol, extracellular | 99.44 | 99.44 |
| CDY29907 | Canola | extracellular | 94.39 | 94.5 |
| CDX92875 | Canola | extracellular | 94.06 | 94.16 |
| AT4G28470.1 | Thale cress | cytosol | 90.81 | 90.91 |
| CDY05774 | Canola | cytosol | 90.36 | 89.96 |
| CDY31952 | Canola | plasma membrane | 84.19 | 87.73 |
| CDY14239 | Canola | cytosol, extracellular | 83.63 | 84.01 |
| CDX97442 | Canola | cytosol | 83.07 | 83.92 |
| Solyc07g053650.2.1 | Tomato | nucleus | 76.91 | 83.45 |
| VIT_12s0028g03130.t01 | Wine grape | cytosol | 82.51 | 82.7 |
| PGSC0003DMT400024306 | Potato | cytosol | 82.51 | 82.14 |
| GSMUA_Achr11P... | Banana | cytosol | 74.1 | 74.44 |
| TraesCS6A01G116500.1 | Wheat | golgi, unclear | 74.66 | 74.41 |
| TraesCS6D01G105500.1 | Wheat | golgi | 74.66 | 74.41 |
| HORVU6Hr1G021020.1 | Barley | cytosol | 74.55 | 74.05 |
| TraesCS6B01G144500.1 | Wheat | cytosol | 74.66 | 73.67 |
| Os02t0146700-02 | Rice | plasma membrane | 73.99 | 73.5 |
| Zm00001d053881_P001 | Maize | mitochondrion, plastid | 73.09 | 73.09 |
| EES04513 | Sorghum | cytosol | 73.09 | 72.93 |
| Zm00001d015259_P001 | Maize | cytosol | 72.65 | 72.81 |
| Os09t0326800-01 | Rice | plasma membrane | 70.74 | 70.82 |
| Os06t0699900-01 | Rice | plasma membrane | 71.19 | 70.48 |
| Solyc10g008180.1.1 | Tomato | plastid | 56.28 | 68.67 |
| CDY72396 | Canola | cytosol | 10.87 | 67.36 |
| KRH57774 | Soybean | endoplasmic reticulum, plasma membrane | 20.85 | 63.7 |
| TraesCS7B01G322000.1 | Wheat | cytosol | 59.08 | 59.89 |
| TraesCS7A01G421600.1 | Wheat | mitochondrion | 54.82 | 59.85 |
| TraesCS7B01G321900.1 | Wheat | cytosol | 57.96 | 59.63 |
| TraesCS7D01G413900.1 | Wheat | mitochondrion | 55.04 | 59.09 |
| TraesCS7A01G421700.1 | Wheat | cytosol | 57.96 | 58.75 |
| TraesCS7D01G413800.1 | Wheat | cytosol | 38.0 | 54.68 |
| CDX99107 | Canola | cytosol | 15.47 | 53.28 |
| HORVU7Hr1G097500.16 | Barley | endoplasmic reticulum, golgi, plasma membrane | 30.49 | 46.42 |
| CDY33144 | Canola | extracellular | 15.92 | 45.37 |
| CDY65736 | Canola | extracellular | 16.93 | 37.19 |
| CDY33145 | Canola | extracellular | 0.67 | 26.09 |
| GSMUA_Achr1P10580_001 | Banana | cytosol, nucleus, plasma membrane | 2.8 | 17.24 |
| CDY12178 | Canola | cytosol | 16.59 | 14.92 |
| CDY60623 | Canola | endoplasmic reticulum, golgi | 16.14 | 14.86 |
| CDY19162 | Canola | extracellular | 16.26 | 14.44 |
| CDX84724 | Canola | cytosol, plastid | 16.26 | 14.43 |
| CDX79472 | Canola | cytosol, plastid | 16.14 | 14.41 |
| CDY23791 | Canola | cytosol, plastid | 16.26 | 14.38 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.6.2.2.1 | InterPro:26S_Psome_Rpn1 | UniProt:A0A078HLZ9 | InterPro:ARM-like | InterPro:ARM-type_fold |
| EnsemblPlants:CDY38389 | ProteinID:CDY38389 | ProteinID:CDY38389.1 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008540 |
| GO:GO:0009056 | GO:GO:0019538 | GO:GO:0030163 | GO:GO:0030234 | GO:GO:0042176 | GO:GO:0050790 |
| EnsemblPlantsGene:GSBRNA2T00065813001 | InterPro:IPR011989 | PFAM:PF01851 | PIRSF:PIRSF015965 | PANTHER:PTHR10943 | PANTHER:PTHR10943:SF8 |
| InterPro:Proteasome/cyclosome_rpt | SUPFAM:SSF48371 | UniParc:UPI0004EEBD77 | SEG:seg | : | : |
Description
BnaC01g09980DBnaC01g09980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HLZ9]
Coordinates
chrLK032423:+:128724..134251
Molecular Weight (calculated)
97751.9 Da
IEP (calculated)
4.807
GRAVY (calculated)
-0.069
Length
892 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPVPDPNNV GGGAKRDEAT TKVPSKDPKK KDDKKEDDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KELHKNMADS DLKKLLADIL SVLALTMSAE GERESLGYRL TGSGGDIGSW GHEYVRNLAG EIAEEYTMRQ SEEASIEDLM DLVKQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLAHVDRTN FRRTCNYLTS SAKFLPGPDD MLVLDIAYMI YMKFEEYPNA LQVALFLDNM QYVKQVFTSC TDLLRKKQFC YMISRHGITV
301: ELDSEMVADK DDRDMLQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSS PSVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDAASGTA
401: GNWLFKNKEH GKTSAAASLG MILLWDVDAG LTQLDKYFHS TDNPVLAGAL LGVGINNCGI KSDCDPALAL LGEYVDNEDS SVRIGAIMGL GIAYAGSQND
501: QLRSSLSPIL NDAKAPLDVI AFAALSLGMI YVGSCNEEVA QSIIFALMDR SEAQLGDALT RFLPLGLGLL YLGKQQESVE ATAEVSKTFN EKIRKYCDMT
601: LLSCAYAGTG NVLKVQDLLA QCGEHLEKGD IHQGPAVLGI AMVAMSEELG LDMAIRSLER VLQYGEQNIR RAVPLALGLL CISNPKVNVM DTLSRLSHDT
701: DSEVAMAAII SLGLIGAGTN NARIAGMLRN LSSYYYKDAS LLFCVRIAQG FVHMGKGLLT LSPFHSERLL LSPTALAGIV TLLHACLDMK SIILGKYHYV
801: LYFIVLAMQP RMMLTVDENL KPISVPVRVG QAVDVVGQAG RPKTITGFQT HSTPVLLAAG ERAELATDKY IPLSPILEGF IILKENPDYR EE
101: KELHKNMADS DLKKLLADIL SVLALTMSAE GERESLGYRL TGSGGDIGSW GHEYVRNLAG EIAEEYTMRQ SEEASIEDLM DLVKQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLAHVDRTN FRRTCNYLTS SAKFLPGPDD MLVLDIAYMI YMKFEEYPNA LQVALFLDNM QYVKQVFTSC TDLLRKKQFC YMISRHGITV
301: ELDSEMVADK DDRDMLQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSS PSVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDAASGTA
401: GNWLFKNKEH GKTSAAASLG MILLWDVDAG LTQLDKYFHS TDNPVLAGAL LGVGINNCGI KSDCDPALAL LGEYVDNEDS SVRIGAIMGL GIAYAGSQND
501: QLRSSLSPIL NDAKAPLDVI AFAALSLGMI YVGSCNEEVA QSIIFALMDR SEAQLGDALT RFLPLGLGLL YLGKQQESVE ATAEVSKTFN EKIRKYCDMT
601: LLSCAYAGTG NVLKVQDLLA QCGEHLEKGD IHQGPAVLGI AMVAMSEELG LDMAIRSLER VLQYGEQNIR RAVPLALGLL CISNPKVNVM DTLSRLSHDT
701: DSEVAMAAII SLGLIGAGTN NARIAGMLRN LSSYYYKDAS LLFCVRIAQG FVHMGKGLLT LSPFHSERLL LSPTALAGIV TLLHACLDMK SIILGKYHYV
801: LYFIVLAMQP RMMLTVDENL KPISVPVRVG QAVDVVGQAG RPKTITGFQT HSTPVLLAAG ERAELATDKY IPLSPILEGF IILKENPDYR EE
001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
Arabidopsis Description
RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.