CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70438
CDX78461
CDX80461
CDX91181
CDX92969
CDX94878
CDY02176
CDY05402
CDY05452
CDY08148
CDY23090
CDY35484
CDY40829
CDY67814
CDY69515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60820.1	CDX92969	AT3G22960.1	21798944
AT3G60820.1	CDX94878	AT3G22960.1	21798944
AT3G60820.1	CDY35484	AT3G22960.1	21798944
AT3G60820.1	CDY40829	AT3G22960.1	21798944
AT3G60820.1	CDY08148	AT3G49580.1	21798944
AT3G60820.1	CDX70438	AT5G11980.1	21798944
AT3G60820.1	CDX78461	AT5G11980.1	21798944
AT3G60820.1	CDX91181	AT5G11980.1	21798944
AT3G60820.1	CDY67814	AT5G11980.1	21798944
AT3G60820.1	CDX80461	AT5G24660.1	21798944
AT3G60820.1	CDY05402	AT5G24660.1	21798944
AT3G60820.1	CDY05452	AT5G24660.1	21798944
AT3G60820.1	CDY69515	AT5G24660.1	21798944
AT3G60820.1	CDY02176	AT5G61010.1	21798944
AT3G60820.1	CDY23090	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07280	Canola	endoplasmic reticulum, plasma membrane	71.53	48.04
GSMUA_Achr5P18150_001	Banana	cytosol, mitochondrion, peroxisome, plastid	50.37	46.0
Bra003428.1-P	Field mustard	cytosol	66.42	40.81
CDY52345	Canola	cytosol	66.42	40.81
CDX71775	Canola	cytosol	66.42	40.81
CDX67842	Canola	cytosol	66.42	40.81
CDY56729	Canola	cytosol	65.69	40.36
CDX89080	Canola	cytosol	64.96	39.91
CDX71344	Canola	cytosol	64.96	39.91
Zm00001d011021_P001	Maize	cytosol, extracellular, mitochondrion, plastid	22.63	37.8
AT3G60820.1	Thale cress	cytosol	61.31	37.67
OQU89746	Sorghum	cytosol	48.91	36.22
TraesCS5A01G285600.1	Wheat	plastid	53.28	33.03
GSMUA_Achr2P00960_001	Banana	plasma membrane	53.28	33.03
TraesCS5B01G284800.1	Wheat	cytosol	53.28	33.03
TraesCS5D01G292900.1	Wheat	cytosol	53.28	33.03
Os09t0505600-01	Rice	plastid	52.55	32.58
Zm00001d006085_P002	Maize	extracellular	52.55	32.58
Zm00001d021051_P002	Maize	mitochondrion	52.55	32.58
GSMUA_Achr11P...	Banana	cytosol	52.55	32.58
EES15319	Sorghum	cytosol	50.37	31.51
Zm00001d031599_P001	Maize	cytosol, extracellular	50.37	31.51
Os08t0529100-01	Rice	cytosol	49.63	31.05
HORVU5Hr1G076130.2	Barley	plastid	53.28	28.29
Zm00001d018456_P001	Maize	cytosol	14.6	18.52
Zm00001d043281_P001	Maize	cytosol	14.6	18.52
CDY46344	Canola	endoplasmic reticulum	34.31	17.8
CDY40893	Canola	mitochondrion	16.79	13.94
CDY71260	Canola	cytosol	16.06	11.52
CDY67773	Canola	extracellular	16.06	11.52
CDY38347	Canola	extracellular	16.06	11.52
CDY70670	Canola	cytosol, mitochondrion	13.14	11.25
CDY08181	Canola	cytosol	16.06	10.78
CDY04667	Canola	cytosol	16.06	10.78
CDY00398	Canola	extracellular	16.06	10.78
CDY01316	Canola	cytosol	16.06	10.68
CDY40889	Canola	mitochondrion	5.84	9.76
CDY08180	Canola	plastid	9.49	5.86
GSMUA_AchrUn_...	Banana	extracellular	4.38	5.77
CDX71420	Canola	plastid	3.65	4.07

Protein Annotations

EnsemblPlants:CDX95297	EnsemblPlantsGene:GSBRNA2T00100951001	Gene3D:3.60.20.10	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PANTHER:PTHR11599
PANTHER:PTHR11599:SF107	ProteinID:CDX95297	ProteinID:CDX95297.1	SUPFAM:SSF56235	UniParc:UPI0004EE335E	MapMan:35.1

Description

BnaC04g28610D

Coordinates

chrLK031888:-:688..1732

Molecular Weight (calculated)

15291.4 Da

IEP (calculated)

4.361

GRAVY (calculated)

-0.028

Length

137 amino acids

Sequence
(BLAST)

001: MASSMSISPR YTLLAMELIK YMQQDNDVEL SSLEMGKGCV FTYDAVGSYE KVGYSAQGSG STLIMPSLTI SSRVPARFCF LSRFDTITPL SEPEAVDLVN
101: TVFASATERD IYTGYKLEIM ILKPDDIRTE VMELRKD

Best Arabidopsis Sequence Match ( AT3G60820.1 )
(BLAST)

001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADRAVLSS SGFQADVKAL QKVLKSRHLI YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD

Arabidopsis Description

PBF1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178V6R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.