CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40893	Canola	mitochondrion	79.38	76.97
CDY40889	Canola	mitochondrion	38.12	74.39
CDY67773	Canola	extracellular	87.5	73.3
CDY38347	Canola	extracellular	87.5	73.3
CDY71260	Canola	cytosol	86.88	72.77
Zm00001d036758_P002	Maize	extracellular	51.88	72.17
CDY00398	Canola	extracellular	87.5	68.63
CDY08181	Canola	cytosol	87.5	68.63
CDY04667	Canola	cytosol	87.5	68.63
AT1G21720.1	Thale cress	cytosol	86.88	68.14
CDY01316	Canola	cytosol	87.5	67.96
KRH16390	Soybean	nucleus	81.88	64.22
Solyc04g009410.2.1	Tomato	extracellular	81.88	64.22
KRH17983	Soybean	endoplasmic reticulum	81.25	63.73
VIT_18s0001g02260.t01	Wine grape	cytosol	81.25	63.73
PGSC0003DMT400082475	Potato	cytosol	81.25	63.73
TraesCS6B01G174200.1	Wheat	golgi	78.12	61.27
TraesCS6A01G145800.1	Wheat	cytosol	78.12	61.27
HORVU0Hr1G015750.1	Barley	cytosol	78.12	61.27
TraesCS6D01G135100.1	Wheat	plastid	77.5	60.78
Os06t0643100-01	Rice	plasma membrane	77.5	60.78
TraesCS7D01G510600.1	Wheat	cytosol	77.5	60.78
EES06388	Sorghum	cytosol	76.88	60.29
TraesCS7B01G437600.1	Wheat	cytosol	76.88	60.29
TraesCS7A01G520800.1	Wheat	golgi	76.88	60.29
EER90101	Sorghum	cytosol	76.25	59.8
Os02t0182500-01	Rice	cytosol	75.62	59.31
Zm00001d015526_P002	Maize	cytosol	76.88	58.02
Zm00001d046600_P001	Maize	cytosol	73.75	51.3
HORVU7Hr1G115980.1	Barley	plastid	76.88	46.42
GSMUA_Achr10P...	Banana	extracellular	15.62	45.45
Zm00001d036756_P001	Maize	cytosol	24.38	39.39
CDY52345	Canola	cytosol	24.38	17.49
CDX89080	Canola	cytosol	24.38	17.49
CDX71775	Canola	cytosol	24.38	17.49
CDX71344	Canola	cytosol	24.38	17.49
CDY56729	Canola	cytosol	23.75	17.04
CDX67842	Canola	cytosol	23.75	17.04
CDX95297	Canola	cytosol	11.25	13.14
CDY07280	Canola	endoplasmic reticulum, plasma membrane	15.62	12.25
CDY46344	Canola	endoplasmic reticulum	19.38	11.74
HORVU6Hr1G065260.1	Barley	cytosol	3.12	10.0
CDY08180	Canola	plastid	11.88	8.56
CDX71420	Canola	plastid	4.38	5.69

Protein Annotations

MapMan:19.2.6.1.2.3	Gene3D:3.60.20.10	GO:A0A078JW39	UniProt:A0A078JW39	EnsemblPlants:CDY70670	ProteinID:CDY70670
ProteinID:CDY70670.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00005286001	InterPro:IPR029055	InterPro:Ntn_hydrolases_N
PFAM:PF00227	PANTHER:PTHR11599	PANTHER:PTHR11599:SF104	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI0004EE7377

Description

BnaCnng69300DBnaCnng69300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JW39]

Coordinates

chrLK042885:-:1383..2651

Molecular Weight (calculated)

18257.0 Da

IEP (calculated)

6.266

GRAVY (calculated)

-0.258

Length

160 amino acids

Sequence
(BLAST)

001: MSKHCKLIVQ AFCSSKDFVR YQRLVFRHKL YQLREERDMK PETFASLVSA IIYEKRFGPY LCQPVIAGLG EDDKPFIYTM DSIGAKELAK DFVVSGTASE
101: SLYGACEAMY KPDMEAEELF ETISQALLSS VDRDCLSGWG GHVYVNTKEI KERILKGRMD

Best Arabidopsis Sequence Match ( AT1G21720.1 )
(BLAST)

001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDRVF IGLSGLATDV QTLYQRLVFR HKLYQLREER DMKPETFASL VSAILYEKRF
101: GPYLCQPVIA GLGDDDKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMYKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYIVT PTEIKERILK
201: GRMD

Arabidopsis Description

PBC1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178WJZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.