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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • mitochondrion 2
  • plastid 1
  • cytosol 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:mitochondrion
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:secretory
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH16390 Soybean nucleus 99.02 99.02
Zm00001d036756_P001 Maize cytosol 46.08 94.95
KRH64671 Soybean cytosol 93.63 93.63
CDY67773 Canola extracellular 86.76 92.67
AT1G77440.1 Thale cress cytosol 92.65 92.65
AT1G21720.1 Thale cress cytosol 92.65 92.65
Bra016408.1-P Field mustard cytosol 92.65 92.65
Bra038565.1-P Field mustard cytosol 92.16 92.16
CDY04667 Canola cytosol 92.16 92.16
CDY08181 Canola cytosol 92.16 92.16
CDY71260 Canola cytosol 86.27 92.15
CDY00398 Canola extracellular 91.67 91.67
Bra012292.1-P Field mustard cytosol 91.67 91.67
CDY38347 Canola extracellular 85.78 91.62
Bra008308.1-P Field mustard cytosol 85.78 91.62
CDY01316 Canola cytosol 91.67 90.78
TraesCS6B01G174200.1 Wheat golgi 90.69 90.69
TraesCS6A01G145800.1 Wheat cytosol 90.69 90.69
HORVU0Hr1G015750.1 Barley cytosol 90.2 90.2
EES06388 Sorghum cytosol 90.2 90.2
TraesCS6D01G135100.1 Wheat plastid 89.71 89.71
KRH53242 Soybean cytosol 80.88 89.67
TraesCS7D01G510600.1 Wheat cytosol 89.22 89.22
EER90101 Sorghum cytosol 89.22 89.22
Os06t0643100-01 Rice plasma membrane 88.73 88.73
TraesCS7B01G437600.1 Wheat cytosol 88.73 88.73
TraesCS7A01G520800.1 Wheat golgi 88.73 88.73
Os02t0182500-01 Rice cytosol 88.73 88.73
Zm00001d015526_P002 Maize cytosol 89.22 85.85
CDY70670 Canola cytosol, mitochondrion 63.73 81.25
CDY40893 Canola mitochondrion 63.73 78.79
HORVU6Hr1G065260.1 Barley cytosol 19.12 78.0
Zm00001d046600_P001 Maize cytosol 87.75 77.83
Zm00001d036758_P002 Maize extracellular 43.63 77.39
KRH58259 Soybean cytosol 27.45 72.73
CDY40889 Canola mitochondrion 27.94 69.51
HORVU7Hr1G115980.1 Barley plastid 87.25 67.17
GSMUA_Achr10P... Banana extracellular 12.75 47.27
Bra017945.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 86.27 41.9
KRG99348 Soybean nucleus 26.47 24.22
KRH45659 Soybean endoplasmic reticulum, nucleus 25.98 23.77
Protein Annotations
EntrezGene:100499664MapMan:19.2.6.1.2.3Gene3D:3.60.20.10EMBL:ACUP02008019EMBL:BT089084UniProt:C6SV91
EnsemblPlantsGene:GLYMA_13G031200GO:GO:0000502GO:GO:0003674GO:GO:0003824GO:GO:0004175GO:GO:0004298
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0005839
GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0009056GO:GO:0009987
GO:GO:0016787GO:GO:0019538GO:GO:0019774GO:GO:0043161GO:GO:0051603InterPro:IPR023333
InterPro:IPR029055ProteinID:KRH17982.1EnsemblPlants:KRH17983ProteinID:KRH17983ProteinID:KRH17983.1InterPro:Ntn_hydrolases_N
PFAM:PF00227ScanProsite:PS00854PFscan:PS51476PANTHER:PTHR11599PANTHER:PTHR11599:SF104InterPro:Proteasome_beta_3
InterPro:Proteasome_bsu_CSInterPro:Proteasome_suB-typeInterPro:Proteasome_sua/bSUPFAM:SSF56235MEROPS:T01.P02UniParc:UPI0001B15570
Description
hypothetical protein
Coordinates
chr13:-:10179916..10185758
Molecular Weight (calculated)
22817.6 Da
IEP (calculated)
5.110
GRAVY (calculated)
-0.038
Length
204 amino acids
Sequence
(BLAST)
001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDKLF IALSGLATDA QTLYQRLVFR HKLYQLREER DMKPETFASL VSALLYEKRF
101: GPYFCQPVIA GLGDEDKPFI CTMDCLGAKE LAKDFVVSGT ASESLYGACE AMFKPDMEPE ELFETISQAL LSSVDRDCLS GWGGHVYVVT PTEVKERILK
201: GRMD
Best Arabidopsis Sequence Match ( AT1G21720.1 )
(BLAST)
001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDRVF IGLSGLATDV QTLYQRLVFR HKLYQLREER DMKPETFASL VSAILYEKRF
101: GPYLCQPVIA GLGDDDKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMYKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYIVT PTEIKERILK
201: GRMD
Arabidopsis Description
PBC1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178WJZ7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.