Factsheet for Bra008308.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38347	Canola	extracellular	99.48	99.48
Bra038565.1-P	Field mustard	cytosol	97.91	91.67
Bra012292.1-P	Field mustard	cytosol	97.38	91.18
Bra016408.1-P	Field mustard	cytosol	97.38	91.18
AT1G77440.1	Thale cress	cytosol	96.34	90.2
KRH16390	Soybean	nucleus	92.67	86.76
Solyc04g009410.2.1	Tomato	extracellular	92.15	86.27
KRH17983	Soybean	endoplasmic reticulum	91.62	85.78
PGSC0003DMT400082475	Potato	cytosol	91.1	85.29
VIT_18s0001g02260.t01	Wine grape	cytosol	89.01	83.33
EES06388	Sorghum	cytosol	86.91	81.37
TraesCS6A01G145800.1	Wheat	cytosol	86.91	81.37
TraesCS6B01G174200.1	Wheat	golgi	86.91	81.37
TraesCS6D01G135100.1	Wheat	plastid	86.91	81.37
Os06t0643100-01	Rice	plasma membrane	86.91	81.37
EER90101	Sorghum	cytosol	86.39	80.88
HORVU0Hr1G015750.1	Barley	cytosol	86.39	80.88
TraesCS7D01G510600.1	Wheat	cytosol	85.86	80.39
TraesCS7A01G520800.1	Wheat	golgi	85.34	79.9
TraesCS7B01G437600.1	Wheat	cytosol	85.34	79.9
Os02t0182500-01	Rice	cytosol	85.34	79.9
Zm00001d036756_P001	Maize	cytosol	41.36	79.8
Zm00001d015526_P002	Maize	cytosol	85.86	77.36
Zm00001d036758_P002	Maize	extracellular	44.5	73.91
HORVU6Hr1G065260.1	Barley	cytosol	18.32	70.0
Zm00001d046600_P001	Maize	cytosol	83.77	69.57
HORVU7Hr1G115980.1	Barley	plastid	84.82	61.13
GSMUA_Achr10P...	Banana	extracellular	13.61	47.27
Bra017945.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	90.58	41.19
Bra014468.1-P	Field mustard	cytosol	26.7	22.87
Bra007565.1-P	Field mustard	cytosol	26.18	22.42
Bra003428.1-P	Field mustard	cytosol	26.18	22.42

Protein Annotations

MapMan:19.2.6.1.2.3	Gene3D:3.60.20.10	EnsemblPlantsGene:Bra008308	EnsemblPlants:Bra008308.1	EnsemblPlants:Bra008308.1-P	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005839	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0019774	GO:GO:0043161	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055
UniProt:M4CVR1	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF104
InterPro:Proteasome_beta_3	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI000254610E	:

Description

AT1G21720 (E=2e-104) PBC1 | PBC1 (PROTEASOME BETA SUBUNIT C1); peptidase/ threonine-type endopeptidase

Coordinates

chrA02:+:14612741..14614596

Molecular Weight (calculated)

21437.9 Da

IEP (calculated)

5.699

GRAVY (calculated)

-0.117

Length

191 amino acids

Sequence
(BLAST)

001: MVGKNCFAIA SDRRLGVQLQ TIATDFKRIS KIHDHLFIGL SGLATDVQTL YQRLVFRHKL YQLREERDMK PETFASLVSA ILYEKRFGPY LCQPVIAGLG
101: EDDKPFICTM DSIGAKELAK DFVVSGTASE SLYGACEAMY KPDMEAEELF ETISQALLSS VDRDCLSGWG GHVYVVTPNE IKERILKGRM D

Best Arabidopsis Sequence Match ( AT1G21720.1 )
(BLAST)

001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDRVF IGLSGLATDV QTLYQRLVFR HKLYQLREER DMKPETFASL VSAILYEKRF
101: GPYLCQPVIA GLGDDDKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMYKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYIVT PTEIKERILK
201: GRMD

Arabidopsis Description

PBC1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178WJZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.