Factsheet for Os06t0643100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0182500-01	Rice	cytosol	95.59	95.59
EER90101	Sorghum	cytosol	94.12	94.12
GSMUA_Achr9P13190_001	Banana	cytosol	86.76	92.67
TraesCS7B01G437600.1	Wheat	cytosol	91.67	91.67
TraesCS7A01G520800.1	Wheat	golgi	91.67	91.67
GSMUA_Achr4P01890_001	Banana	cytosol	91.67	91.67
TraesCS7D01G510600.1	Wheat	cytosol	91.18	91.18
KRH64671	Soybean	cytosol	89.71	89.71
KRH17983	Soybean	endoplasmic reticulum	88.73	88.73
KRH16390	Soybean	nucleus	88.73	88.73
Bra038565.1-P	Field mustard	cytosol	88.24	88.24
CDY04667	Canola	cytosol	88.24	88.24
CDY08181	Canola	cytosol	88.24	88.24
AT1G77440.1	Thale cress	cytosol	87.75	87.75
AT1G21720.1	Thale cress	cytosol	87.75	87.75
CDY00398	Canola	extracellular	87.75	87.75
Bra012292.1-P	Field mustard	cytosol	87.75	87.75
Bra016408.1-P	Field mustard	cytosol	87.75	87.75
CDY67773	Canola	extracellular	81.37	86.91
CDY71260	Canola	cytosol	81.37	86.91
CDY38347	Canola	extracellular	81.37	86.91
Bra008308.1-P	Field mustard	cytosol	81.37	86.91
CDY01316	Canola	cytosol	87.75	86.89
KRH53242	Soybean	cytosol	77.94	86.41
Solyc04g009410.2.1	Tomato	extracellular	86.27	86.27
VIT_18s0001g02260.t01	Wine grape	cytosol	85.78	85.78
PGSC0003DMT400082475	Potato	cytosol	85.29	85.29
Zm00001d046600_P001	Maize	cytosol	92.65	82.17
Zm00001d036758_P002	Maize	extracellular	46.08	81.74
CDY70670	Canola	cytosol, mitochondrion	60.78	77.5
CDY40893	Canola	mitochondrion	61.76	76.36
CDY40889	Canola	mitochondrion	28.92	71.95
HORVU7Hr1G115980.1	Barley	plastid	90.2	69.43
Bra017945.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	83.33	40.48
Os09t0505600-01	Rice	plastid	25.98	23.98
Os08t0529100-01	Rice	cytosol	23.53	21.92

Protein Annotations

MapMan:19.2.6.1.2.3	Gene3D:3.60.20.10	EntrezGene:4341637	EMBL:AB026565	ProteinID:BAD37365.1	ProteinID:BAF20090.1
ProteinID:BAS98828.1	ProteinID:EEE66098.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019774	GO:GO:0043161	GO:GO:0051603
InterPro:IPR023333	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	EnsemblPlantsGene:Os06g0643100	EnsemblPlants:Os06t0643100-01	PFAM:PF00227
ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF104	InterPro:Proteasome_beta_3	InterPro:Proteasome_bsu_CS
InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	UniProt:Q9LST7	SUPFAM:SSF56235	MEROPS:T01.P02	UniParc:UPI00001325B5
RefSeq:XP_015641231.1	:	:	:	:	:

Description

20S proteasome beta3 subunitProteasome subunit beta type 3 (EC 3.4.25.1) (20S proteasome alpha subunit C) (20S proteasome subunit beta-3). (Os06t0643100-01)

Coordinates

chr6:-:26199409..26202782

Molecular Weight (calculated)

22803.5 Da

IEP (calculated)

4.908

GRAVY (calculated)

-0.029

Length

204 amino acids

Sequence
(BLAST)

001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTVATDFQ RVFKIHDKLY IGLSGLATDA QTLYQRLVFR HKLYQLREER DMKPQTFASL VSALLYEKRF
101: GPYFCQPVIA GLGEDNEPFI CTMDCIGAKE LAKDFVVSGT ASESLYGACE SMYKPNMEPE ELFETISQAL QSSVDRDCLS GWGGFVLLVT PTEVKECVIK
201: GRMD

Best Arabidopsis Sequence Match ( AT1G21720.1 )
(BLAST)

001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDRVF IGLSGLATDV QTLYQRLVFR HKLYQLREER DMKPETFASL VSAILYEKRF
101: GPYLCQPVIA GLGDDDKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMYKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYIVT PTEIKERILK
201: GRMD

Arabidopsis Description

PBC1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178WJZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.