Factsheet for GSMUA_Achr4P01890_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P13190_001	Banana	cytosol	90.2	96.34
Zm00001d036756_P001	Maize	cytosol	45.59	93.94
EES06388	Sorghum	cytosol	92.16	92.16
TraesCS6D01G135100.1	Wheat	plastid	92.16	92.16
Os02t0182500-01	Rice	cytosol	91.67	91.67
TraesCS6B01G174200.1	Wheat	golgi	91.67	91.67
TraesCS6A01G145800.1	Wheat	cytosol	91.67	91.67
Os06t0643100-01	Rice	plasma membrane	91.67	91.67
HORVU0Hr1G015750.1	Barley	cytosol	91.18	91.18
EER90101	Sorghum	cytosol	91.18	91.18
TraesCS7A01G520800.1	Wheat	golgi	91.18	91.18
TraesCS7B01G437600.1	Wheat	cytosol	91.18	91.18
TraesCS7D01G510600.1	Wheat	cytosol	91.18	91.18
Zm00001d015526_P002	Maize	cytosol	90.69	87.26
Zm00001d046600_P001	Maize	cytosol	88.73	78.7
Zm00001d036758_P002	Maize	extracellular	44.12	78.26
HORVU6Hr1G065260.1	Barley	cytosol	19.12	78.0
HORVU7Hr1G115980.1	Barley	plastid	89.71	69.06
GSMUA_Achr10P...	Banana	extracellular	13.24	49.09
GSMUA_AchrUn_...	Banana	extracellular	14.22	27.88
GSMUA_Achr2P00960_001	Banana	plasma membrane	25.98	23.98
GSMUA_Achr11P...	Banana	cytosol	25.98	23.98
GSMUA_Achr5P18150_001	Banana	cytosol, mitochondrion, peroxisome, plastid	15.2	20.67

Protein Annotations

MapMan:19.2.6.1.2.3	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019774	GO:GO:0043161	GO:GO:0051603
EnsemblPlantsGene:GSMUA_Achr4G01890_001	EnsemblPlants:GSMUA_Achr4P01890_001	EnsemblPlants:GSMUA_Achr4T01890_001	InterPro:IPR023333	InterPro:IPR029055	UniProt:M0SKA6
InterPro:Ntn_hydrolases_N	PFAM:PF00227	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF104
InterPro:Proteasome_beta_3	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI000295689D

Description

Proteasome subunit beta type-3 [Source:GMGC_GENE;Acc:GSMUA_Achr4G01890_001]

Coordinates

chr4:+:1673835..1679339

Molecular Weight (calculated)

22821.6 Da

IEP (calculated)

5.071

GRAVY (calculated)

-0.014

Length

204 amino acids

Sequence
(BLAST)

001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV NLQTIATDFQ RIFKIHDKLY IGLSGLATDV QTLYQRLIFR HKLYQLREER DMKPQTFASL VSALLYEKRF
101: GPYFCMPVIA GLGDDDAPFI CTMDCIGAKE LAKDFVVSGT ASESLYGACE SMYKPNMEPE ELFETISQAL LSSVDRDCLS GWGGHVLLVT PTEVQERTLK
201: GRMD

Best Arabidopsis Sequence Match ( AT1G21720.1 )
(BLAST)

001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDRVF IGLSGLATDV QTLYQRLVFR HKLYQLREER DMKPETFASL VSAILYEKRF
101: GPYLCQPVIA GLGDDDKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMYKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYIVT PTEIKERILK
201: GRMD

Arabidopsis Description

PBC1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178WJZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.