Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40889 | Canola | mitochondrion | 45.45 | 30.49 |
| CDY70670 | Canola | cytosol, mitochondrion | 45.45 | 15.62 |
| CDY40893 | Canola | mitochondrion | 45.45 | 15.15 |
| GSMUA_Achr9P13190_001 | Banana | cytosol | 49.09 | 14.14 |
| Bra008308.1-P | Field mustard | cytosol | 47.27 | 13.61 |
| CDY67773 | Canola | extracellular | 47.27 | 13.61 |
| CDY38347 | Canola | extracellular | 47.27 | 13.61 |
| VIT_18s0001g02260.t01 | Wine grape | cytosol | 49.09 | 13.24 |
| AT1G21720.1 | Thale cress | cytosol | 49.09 | 13.24 |
| PGSC0003DMT400082475 | Potato | cytosol | 49.09 | 13.24 |
| KRH16390 | Soybean | nucleus | 49.09 | 13.24 |
| GSMUA_Achr4P01890_001 | Banana | cytosol | 49.09 | 13.24 |
| CDY71260 | Canola | cytosol | 45.45 | 13.09 |
| CDY08181 | Canola | cytosol | 47.27 | 12.75 |
| CDY04667 | Canola | cytosol | 47.27 | 12.75 |
| CDY00398 | Canola | extracellular | 47.27 | 12.75 |
| Bra038565.1-P | Field mustard | cytosol | 47.27 | 12.75 |
| Bra016408.1-P | Field mustard | cytosol | 47.27 | 12.75 |
| KRH17983 | Soybean | endoplasmic reticulum | 47.27 | 12.75 |
| Bra012292.1-P | Field mustard | cytosol | 47.27 | 12.75 |
| Solyc04g009410.2.1 | Tomato | extracellular | 47.27 | 12.75 |
| CDY01316 | Canola | cytosol | 47.27 | 12.62 |
| AT1G77440.1 | Thale cress | cytosol | 45.45 | 12.25 |
| GSMUA_Achr5P18150_001 | Banana | cytosol, mitochondrion, peroxisome, plastid | 21.82 | 8.0 |
| GSMUA_AchrUn_... | Banana | extracellular | 12.73 | 6.73 |
| Bra017945.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 49.09 | 6.43 |
| GSMUA_Achr11P... | Banana | cytosol | 20.0 | 4.98 |
| GSMUA_Achr2P00960_001 | Banana | plasma membrane | 20.0 | 4.98 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P02660_001 | EnsemblPlants:GSMUA_Achr10T02660_001 | EnsemblPlantsGene:GSMUA_Achr10G02660_001 | InterPro:IPR029055 | InterPro:Ntn_hydrolases_N | PANTHER:PTHR11599 |
| PANTHER:PTHR11599:SF104 | SUPFAM:SSF56235 | UniParc:UPI0002947F6D | UniProt:M0REU3 | MapMan:35.2 | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G02660_001]
Coordinates
chr10:-:8034313..8034480
Molecular Weight (calculated)
6321.7 Da
IEP (calculated)
4.546
GRAVY (calculated)
0.620
Length
55 amino acids
Sequence
(BLAST)
(BLAST)
1: MLYIYIYIFF CGSRFGPYFW HPVIAGLGDD DVPFICTMDY IGAKYDFSLL ALSHG
001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDRVF IGLSGLATDV QTLYQRLVFR HKLYQLREER DMKPETFASL VSAILYEKRF
101: GPYLCQPVIA GLGDDDKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMYKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYIVT PTEIKERILK
201: GRMD
101: GPYLCQPVIA GLGDDDKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMYKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYIVT PTEIKERILK
201: GRMD
Arabidopsis Description
PBC1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178WJZ7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.