CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17983	Soybean	endoplasmic reticulum	99.02	99.02
Zm00001d036756_P001	Maize	cytosol	46.08	94.95
KRH64671	Soybean	cytosol	93.63	93.63
AT1G77440.1	Thale cress	cytosol	93.14	93.14
Bra008308.1-P	Field mustard	cytosol	86.76	92.67
CDY67773	Canola	extracellular	86.76	92.67
CDY38347	Canola	extracellular	86.76	92.67
AT1G21720.1	Thale cress	cytosol	92.65	92.65
CDY00398	Canola	extracellular	92.65	92.65
Bra016408.1-P	Field mustard	cytosol	92.65	92.65
CDY04667	Canola	cytosol	92.16	92.16
CDY08181	Canola	cytosol	92.16	92.16
Bra038565.1-P	Field mustard	cytosol	92.16	92.16
CDY71260	Canola	cytosol	86.27	92.15
Bra012292.1-P	Field mustard	cytosol	91.67	91.67
CDY01316	Canola	cytosol	91.67	90.78
TraesCS6B01G174200.1	Wheat	golgi	90.69	90.69
TraesCS6A01G145800.1	Wheat	cytosol	90.69	90.69
HORVU0Hr1G015750.1	Barley	cytosol	90.2	90.2
EES06388	Sorghum	cytosol	90.2	90.2
TraesCS6D01G135100.1	Wheat	plastid	89.71	89.71
KRH53242	Soybean	cytosol	80.88	89.67
TraesCS7D01G510600.1	Wheat	cytosol	89.22	89.22
EER90101	Sorghum	cytosol	89.22	89.22
Os06t0643100-01	Rice	plasma membrane	88.73	88.73
TraesCS7B01G437600.1	Wheat	cytosol	88.73	88.73
TraesCS7A01G520800.1	Wheat	golgi	88.73	88.73
Os02t0182500-01	Rice	cytosol	88.73	88.73
Zm00001d015526_P002	Maize	cytosol	89.22	85.85
CDY70670	Canola	cytosol, mitochondrion	64.22	81.88
CDY40893	Canola	mitochondrion	64.71	80.0
HORVU6Hr1G065260.1	Barley	cytosol	19.12	78.0
Zm00001d046600_P001	Maize	cytosol	86.76	76.96
Zm00001d036758_P002	Maize	extracellular	42.65	75.65
KRH58259	Soybean	cytosol	27.45	72.73
CDY40889	Canola	mitochondrion	28.43	70.73
HORVU7Hr1G115980.1	Barley	plastid	87.25	67.17
GSMUA_Achr10P...	Banana	extracellular	13.24	49.09
Bra017945.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	86.76	42.14
KRG99348	Soybean	nucleus	26.47	24.22
KRH45659	Soybean	endoplasmic reticulum, nucleus	25.98	23.77

Protein Annotations

EntrezGene:100527027	MapMan:19.2.6.1.2.3	Gene3D:3.60.20.10	EMBL:ACUP02008878	EnsemblPlantsGene:GLYMA_14G152900	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0019774	GO:GO:0043161	GO:GO:0051603	UniProt:I1MA63	InterPro:IPR023333	InterPro:IPR029055
EnsemblPlants:KRH16390	ProteinID:KRH16390	ProteinID:KRH16390.1	ProteinID:KRH16391.1	InterPro:Ntn_hydrolases_N	PFAM:PF00227
ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF104	InterPro:Proteasome_beta_3	InterPro:Proteasome_bsu_CS
InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	MEROPS:T01.P02	UniParc:UPI00023D4B69	:

Description

hypothetical protein

Coordinates

chr14:-:33236399..33242783

Molecular Weight (calculated)

22830.6 Da

IEP (calculated)

5.110

GRAVY (calculated)

-0.049

Length

204 amino acids

Sequence
(BLAST)

001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDKLF IALSGLATDA QTLYQRLVFR HKLYQLREER DMKPETFASL VSALLYEKRF
101: GPYFCQPVIA GLGDEDKPFI CTMDCIGAKE LAKDFVVSGT ASESLYGACE AMFKPDMEPE ELFETISQAL LSSVDRDCLS GWGGHVYVVT PNEVKERILK
201: GRMD

Best Arabidopsis Sequence Match ( AT1G21720.1 )
(BLAST)

001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDRVF IGLSGLATDV QTLYQRLVFR HKLYQLREER DMKPETFASL VSAILYEKRF
101: GPYLCQPVIA GLGDDDKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMYKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYIVT PTEIKERILK
201: GRMD

Arabidopsis Description

PBC1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178WJZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.