CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70670	Canola	cytosol, mitochondrion	76.97	79.38
CDY40889	Canola	mitochondrion	38.79	78.05
CDY38347	Canola	extracellular	85.45	73.82
CDY67773	Canola	extracellular	84.85	73.3
CDY71260	Canola	cytosol	84.24	72.77
CDY00398	Canola	extracellular	85.45	69.12
CDY08181	Canola	cytosol	84.85	68.63
CDY04667	Canola	cytosol	84.85	68.63
CDY01316	Canola	cytosol	84.85	67.96
AT1G77440.1	Thale cress	cytosol	81.82	66.18
Zm00001d036758_P002	Maize	extracellular	45.45	65.22
KRH16390	Soybean	nucleus	80.0	64.71
VIT_18s0001g02260.t01	Wine grape	cytosol	79.39	64.22
Solyc04g009410.2.1	Tomato	extracellular	79.39	64.22
KRH17983	Soybean	endoplasmic reticulum	78.79	63.73
PGSC0003DMT400082475	Potato	cytosol	78.79	63.73
TraesCS6A01G145800.1	Wheat	cytosol	76.36	61.76
TraesCS6B01G174200.1	Wheat	golgi	76.36	61.76
TraesCS7D01G510600.1	Wheat	cytosol	76.36	61.76
HORVU0Hr1G015750.1	Barley	cytosol	76.36	61.76
Os06t0643100-01	Rice	plasma membrane	76.36	61.76
EES06388	Sorghum	cytosol	75.76	61.27
TraesCS7B01G437600.1	Wheat	cytosol	75.76	61.27
TraesCS6D01G135100.1	Wheat	plastid	75.76	61.27
TraesCS7A01G520800.1	Wheat	golgi	75.76	61.27
EER90101	Sorghum	cytosol	75.15	60.78
Os02t0182500-01	Rice	cytosol	74.55	60.29
Zm00001d015526_P002	Maize	cytosol	75.76	58.96
Zm00001d046600_P001	Maize	cytosol	72.73	52.17
Zm00001d036756_P001	Maize	cytosol	28.48	47.47
HORVU7Hr1G115980.1	Barley	plastid	75.15	46.79
GSMUA_Achr10P...	Banana	extracellular	15.15	45.45
HORVU6Hr1G065260.1	Barley	cytosol	7.27	24.0
CDX89080	Canola	cytosol	26.67	19.73
CDX71344	Canola	cytosol	26.67	19.73
CDY56729	Canola	cytosol	26.06	19.28
CDY52345	Canola	cytosol	26.06	19.28
CDX71775	Canola	cytosol	26.06	19.28
CDX67842	Canola	cytosol	26.06	19.28
CDX95297	Canola	cytosol	13.94	16.79
CDY07280	Canola	endoplasmic reticulum, plasma membrane	16.36	13.24
CDY46344	Canola	endoplasmic reticulum	20.61	12.88
CDY08180	Canola	plastid	12.12	9.01
CDX71420	Canola	plastid	6.06	8.13

Protein Annotations

MapMan:19.2.6.1.2.3	Gene3D:3.60.20.10	GO:A0A078HVS8	UniProt:A0A078HVS8	EnsemblPlants:CDY40893	ProteinID:CDY40893
ProteinID:CDY40893.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00071929001	InterPro:IPR029055	InterPro:Ntn_hydrolases_N
PFAM:PF00227	PANTHER:PTHR11599	PANTHER:PTHR11599:SF104	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI0004EDECFA

Description

BnaCnng09840DBnaCnng09840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVS8]

Coordinates

chrLK032483:+:267481..269587

Molecular Weight (calculated)

18847.7 Da

IEP (calculated)

7.858

GRAVY (calculated)

-0.332

Length

165 amino acids

Sequence
(BLAST)

001: MVGKNCFAIA NPRSSLHRPF RYQRLVFRHK LYQLREERDM KPETFASLVS AILYEKRFGP YLCQPVIAGL GEDDKPFICT MDSIGAKELA KDFVVSGTAS
101: ESNQIWFEIQ KASYKKCNEA EELFETISQA LLSSVDRDCL SGWGGHVYVV TPNEIKERIL KGRMD

Best Arabidopsis Sequence Match ( AT1G21720.1 )
(BLAST)

001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDRVF IGLSGLATDV QTLYQRLVFR HKLYQLREER DMKPETFASL VSAILYEKRF
101: GPYLCQPVIA GLGDDDKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMYKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYIVT PTEIKERILK
201: GRMD

Arabidopsis Description

PBC1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178WJZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.