Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40893 | Canola | mitochondrion | 9.01 | 12.12 |
| CDY70670 | Canola | cytosol, mitochondrion | 8.56 | 11.88 |
| CDY08181 | Canola | cytosol | 10.81 | 11.76 |
| CDY00398 | Canola | extracellular | 10.81 | 11.76 |
| CDY04667 | Canola | cytosol | 10.81 | 11.76 |
| CDY01316 | Canola | cytosol | 10.36 | 11.16 |
| CDY71260 | Canola | cytosol | 9.46 | 10.99 |
| CDY67773 | Canola | extracellular | 9.46 | 10.99 |
| CDY38347 | Canola | extracellular | 9.46 | 10.99 |
| CDY40889 | Canola | mitochondrion | 4.05 | 10.98 |
| CDX89080 | Canola | cytosol | 10.36 | 10.31 |
| CDX71344 | Canola | cytosol | 10.36 | 10.31 |
| CDX71775 | Canola | cytosol | 9.91 | 9.87 |
| CDY52345 | Canola | cytosol | 9.91 | 9.87 |
| CDY56729 | Canola | cytosol | 9.91 | 9.87 |
| CDX67842 | Canola | cytosol | 9.91 | 9.87 |
| CDX95297 | Canola | cytosol | 5.86 | 9.49 |
| CDY46344 | Canola | endoplasmic reticulum | 10.36 | 8.71 |
| CDY07280 | Canola | endoplasmic reticulum, plasma membrane | 5.86 | 6.37 |
| CDX71420 | Canola | plastid | 2.7 | 4.88 |
Protein Annotations
| EnsemblPlants:CDY08180 | EnsemblPlantsGene:GSBRNA2T00125482001 | GO:A0A078F127 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR35278 | PANTHER:PTHR35278:SF1 | ProteinID:CDY08180 | ProteinID:CDY08180.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0004EE99B4 | UniProt:A0A078F127 | MapMan:35.2 | : | : | : |
Description
BnaA06g15460DBnaA06g15460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F127]
Coordinates
chrLK031983:-:894729..895485
Molecular Weight (calculated)
26049.4 Da
IEP (calculated)
10.319
GRAVY (calculated)
-0.352
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSFFTGFVH SLGNFFGSPL DFLSGKSCST LCPSPWDVLC YVENFCVASL AKAALILIVA YLFLFFIYML YKIGFWHCII HGFFRFLWAL VSCWFYILSN
101: CCTFFCYDLL HTKRRRRRRN RRYSEDGDDY SDEDNDDGGS FRYHRSRREM RKEERLRKSL KPRSHRVRVG VRKDHPSSDL GLNQHVGGGV GSVHGIRVSR
201: ESKFARKGSK RRARVYHGPR RI
101: CCTFFCYDLL HTKRRRRRRN RRYSEDGDDY SDEDNDDGGS FRYHRSRREM RKEERLRKSL KPRSHRVRVG VRKDHPSSDL GLNQHVGGGV GSVHGIRVSR
201: ESKFARKGSK RRARVYHGPR RI
001: MGNVMDSFFT GFSHSIGNFF GSPLDFLSGK SCSSVCPSPW DFICYVENFC VANLAKTALI LILSYFFLFF IYMLYKVGFW HCIIHGFFKL LWVLVSCWFY
101: MLGYCCSFFC YDLLHSKRRR RRRHNRYIEE DYDDNSDDDD DVDDDGSFTY HRSKRECRKE ERLRKSLRPR NHRVRVGVRK DHRSDSGLSQ HADGGSPIHG
201: VRVSRESKFA RKVSKRRNRV HHGDRMNHVS LLN
101: MLGYCCSFFC YDLLHSKRRR RRRHNRYIEE DYDDNSDDDD DVDDDGSFTY HRSKRECRKE ERLRKSLRPR NHRVRVGVRK DHRSDSGLSQ HADGGSPIHG
201: VRVSRESKFA RKVSKRRNRV HHGDRMNHVS LLN
Arabidopsis Description
F8K7.16 [Source:UniProtKB/TrEMBL;Acc:Q9XI04]
SUBAcon: [endoplasmic reticulum,plastid,nucleus,plasma membrane]
SUBAcon: [endoplasmic reticulum,plastid,nucleus,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.