CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008308.1-P	Field mustard	cytosol	99.48	99.48
CDY67773	Canola	extracellular	97.91	97.91
CDY71260	Canola	cytosol	97.38	97.38
CDY00398	Canola	extracellular	98.95	92.65
CDY04667	Canola	cytosol	98.43	92.16
CDY08181	Canola	cytosol	98.43	92.16
CDY01316	Canola	cytosol	98.43	91.26
AT1G77440.1	Thale cress	cytosol	95.81	89.71
CDY70670	Canola	cytosol, mitochondrion	73.3	87.5
KRH16390	Soybean	nucleus	92.67	86.76
Solyc04g009410.2.1	Tomato	extracellular	92.15	86.27
KRH17983	Soybean	endoplasmic reticulum	91.62	85.78
CDY40893	Canola	mitochondrion	73.82	85.45
PGSC0003DMT400082475	Potato	cytosol	91.1	85.29
VIT_18s0001g02260.t01	Wine grape	cytosol	89.53	83.82
TraesCS6B01G174200.1	Wheat	golgi	86.91	81.37
EES06388	Sorghum	cytosol	86.91	81.37
Os06t0643100-01	Rice	plasma membrane	86.91	81.37
TraesCS6A01G145800.1	Wheat	cytosol	86.91	81.37
TraesCS6D01G135100.1	Wheat	plastid	86.91	81.37
HORVU0Hr1G015750.1	Barley	cytosol	86.39	80.88
EER90101	Sorghum	cytosol	86.39	80.88
TraesCS7D01G510600.1	Wheat	cytosol	85.86	80.39
Os02t0182500-01	Rice	cytosol	85.34	79.9
TraesCS7B01G437600.1	Wheat	cytosol	85.34	79.9
TraesCS7A01G520800.1	Wheat	golgi	85.34	79.9
Zm00001d036756_P001	Maize	cytosol	41.36	79.8
Zm00001d015526_P002	Maize	cytosol	85.86	77.36
CDY40889	Canola	mitochondrion	32.98	76.83
Zm00001d036758_P002	Maize	extracellular	44.5	73.91
HORVU6Hr1G065260.1	Barley	cytosol	18.32	70.0
Zm00001d046600_P001	Maize	cytosol	83.77	69.57
HORVU7Hr1G115980.1	Barley	plastid	84.82	61.13
GSMUA_Achr10P...	Banana	extracellular	13.61	47.27
CDX89080	Canola	cytosol	26.7	22.87
CDX71344	Canola	cytosol	26.7	22.87
CDX71775	Canola	cytosol	26.18	22.42
CDY56729	Canola	cytosol	26.18	22.42
CDX67842	Canola	cytosol	26.18	22.42
CDY52345	Canola	cytosol	26.18	22.42
CDX95297	Canola	cytosol	11.52	16.06
CDX71420	Canola	plastid	9.95	15.45
CDY46344	Canola	endoplasmic reticulum	20.94	15.15
CDY07280	Canola	endoplasmic reticulum, plasma membrane	15.71	14.71
CDY08180	Canola	plastid	10.99	9.46

Protein Annotations

MapMan:19.2.6.1.2.3	Gene3D:3.60.20.10	GO:A0A078HKE7	UniProt:A0A078HKE7	EnsemblPlants:CDY38347	ProteinID:CDY38347
ProteinID:CDY38347.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004298	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019774	GO:GO:0043161	GO:GO:0051603
EnsemblPlantsGene:GSBRNA2T00065751001	InterPro:IPR023333	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFscan:PS51476
PANTHER:PTHR11599	PANTHER:PTHR11599:SF104	InterPro:Proteasome_beta_3	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235
UniParc:UPI0004EF4290	:	:	:	:	:

Description

BnaA02g18400DBnaA02g18400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKE7]

Coordinates

chrLK032422:-:141321..143674

Molecular Weight (calculated)

21457.0 Da

IEP (calculated)

5.765

GRAVY (calculated)

-0.124

Length

191 amino acids

Sequence
(BLAST)

001: MVGKNCFAIA SDRRLGVQLQ TIATDFKRIS KIHDRLFIGL SGLATDVQTL YQRLVFRHKL YQLREERDMK PETFASLVSA ILYEKRFGPY LCQPVIAGLG
101: EDDKPFICTM DSIGAKELAK DFVVSGTASE SLYGACEAMY KPDMEAEELF ETISQALLSS VDRDCLSGWG GHVYVVTPNE IKERILKGRM D

Best Arabidopsis Sequence Match ( AT1G77440.2 )
(BLAST)

001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDHLF IGLSGLATDV QTLYQRLVFR HKLYQLREER DMKPETFASL VSAILYEKRF
101: GPFLCQPVIA GLGDDNKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMFKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYVVT PKEVKERILK
201: GRMD

Arabidopsis Description

PBC2Proteasome subunit beta type-3-B [Source:UniProtKB/Swiss-Prot;Acc:O81153]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.