Factsheet for Solyc04g009410.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 4
mitochondrion 2
plastid 1
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 22364583
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082475	Potato	cytosol	98.53	98.53
Bra038565.1-P	Field mustard	cytosol	92.65	92.65
CDY04667	Canola	cytosol	92.65	92.65
CDY08181	Canola	cytosol	92.65	92.65
Bra012292.1-P	Field mustard	cytosol	92.16	92.16
Bra016408.1-P	Field mustard	cytosol	92.16	92.16
CDY00398	Canola	extracellular	92.16	92.16
Bra008308.1-P	Field mustard	cytosol	86.27	92.15
CDY67773	Canola	extracellular	86.27	92.15
CDY38347	Canola	extracellular	86.27	92.15
AT1G21720.1	Thale cress	cytosol	91.67	91.67
KRH64671	Soybean	cytosol	91.67	91.67
CDY71260	Canola	cytosol	85.78	91.62
CDY01316	Canola	cytosol	92.16	91.26
AT1G77440.1	Thale cress	cytosol	91.18	91.18
VIT_18s0001g02260.t01	Wine grape	cytosol	89.22	89.22
Zm00001d036756_P001	Maize	cytosol	43.14	88.89
EES06388	Sorghum	cytosol	86.76	86.76
KRH53242	Soybean	cytosol	77.94	86.41
TraesCS6A01G145800.1	Wheat	cytosol	86.27	86.27
Os06t0643100-01	Rice	plasma membrane	86.27	86.27
TraesCS6B01G174200.1	Wheat	golgi	86.27	86.27
EER90101	Sorghum	cytosol	86.27	86.27
TraesCS6D01G135100.1	Wheat	plastid	86.27	86.27
TraesCS7D01G510600.1	Wheat	cytosol	85.78	85.78
HORVU0Hr1G015750.1	Barley	cytosol	85.78	85.78
Os02t0182500-01	Rice	cytosol	85.29	85.29
TraesCS7A01G520800.1	Wheat	golgi	85.29	85.29
TraesCS7B01G437600.1	Wheat	cytosol	85.29	85.29
Zm00001d015526_P002	Maize	cytosol	85.29	82.08
CDY70670	Canola	cytosol, mitochondrion	64.22	81.88
CDY40893	Canola	mitochondrion	64.22	79.39
Zm00001d036758_P002	Maize	extracellular	43.14	76.52
Zm00001d046600_P001	Maize	cytosol	83.82	74.35
HORVU6Hr1G065260.1	Barley	cytosol	18.14	74.0
CDY40889	Canola	mitochondrion	28.43	70.73
HORVU7Hr1G115980.1	Barley	plastid	83.82	64.53
GSMUA_Achr10P...	Banana	extracellular	12.75	47.27
Bra017945.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	85.78	41.67
Solyc02g084920.2.1	Tomato	plastid	24.51	22.42

Protein Annotations

MapMan:19.2.6.1.2.3	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019774	GO:GO:0043161	GO:GO:0051603
InterPro:IPR023333	InterPro:IPR029055	UniProt:K4BP97	InterPro:Ntn_hydrolases_N	PFAM:PF00227	ScanProsite:PS00854
PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF104	InterPro:Proteasome_beta_3	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type
InterPro:Proteasome_sua/b	SUPFAM:SSF56235	EnsemblPlantsGene:Solyc04g009410.2	EnsemblPlants:Solyc04g009410.2.1	MEROPS:T01.P02	UniParc:UPI00027657EC

Description

Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:K4BP97]

Coordinates

chr4:+:2835286..2840148

Molecular Weight (calculated)

22835.5 Da

IEP (calculated)

5.096

GRAVY (calculated)

-0.098

Length

204 amino acids

Sequence
(BLAST)

001: MSIFEYNGSA LVAMVGKNCF AIASDRRFGV QLQTIATDFQ RIYKIHDKLF IGLSGLATDT QTLHQRLMFR HKLYELREDR DMKPETFASL VSAMLYEKRF
101: GPYLCQPVIA GLGEDDKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMYKPDMGPE ELFETISQAL LSSVDRDCLS GWGGHVYVVT PTEVTERILK
201: GRMD

Best Arabidopsis Sequence Match ( AT1G21720.1 )
(BLAST)

001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDRVF IGLSGLATDV QTLYQRLVFR HKLYQLREER DMKPETFASL VSAILYEKRF
101: GPYLCQPVIA GLGDDDKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMYKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYIVT PTEIKERILK
201: GRMD

Arabidopsis Description

PBC1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178WJZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.