Factsheet for VIT_18s0001g02260.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64671	Soybean	cytosol	91.67	91.67
AT1G21720.1	Thale cress	cytosol	91.18	91.18
KRH53242	Soybean	cytosol	81.86	90.76
Bra038565.1-P	Field mustard	cytosol	90.69	90.69
CDY04667	Canola	cytosol	90.69	90.69
CDY08181	Canola	cytosol	90.69	90.69
CDY67773	Canola	extracellular	84.8	90.58
Bra012292.1-P	Field mustard	cytosol	90.2	90.2
Bra016408.1-P	Field mustard	cytosol	90.2	90.2
CDY00398	Canola	extracellular	90.2	90.2
CDY71260	Canola	cytosol	84.31	90.05
AT1G77440.1	Thale cress	cytosol	89.71	89.71
CDY38347	Canola	extracellular	83.82	89.53
CDY01316	Canola	cytosol	90.2	89.32
Solyc04g009410.2.1	Tomato	extracellular	89.22	89.22
PGSC0003DMT400082475	Potato	cytosol	89.22	89.22
Bra008308.1-P	Field mustard	cytosol	83.33	89.01
Zm00001d036756_P001	Maize	cytosol	42.65	87.88
EES06388	Sorghum	cytosol	86.27	86.27
TraesCS6B01G174200.1	Wheat	golgi	85.78	85.78
TraesCS6A01G145800.1	Wheat	cytosol	85.78	85.78
Os06t0643100-01	Rice	plasma membrane	85.78	85.78
Os02t0182500-01	Rice	cytosol	85.78	85.78
HORVU0Hr1G015750.1	Barley	cytosol	85.29	85.29
EER90101	Sorghum	cytosol	85.29	85.29
TraesCS6D01G135100.1	Wheat	plastid	84.8	84.8
TraesCS7D01G510600.1	Wheat	cytosol	84.31	84.31
TraesCS7A01G520800.1	Wheat	golgi	83.82	83.82
TraesCS7B01G437600.1	Wheat	cytosol	83.82	83.82
Zm00001d015526_P002	Maize	cytosol	85.29	82.08
CDY70670	Canola	cytosol, mitochondrion	63.73	81.25
CDY40893	Canola	mitochondrion	64.22	79.39
Zm00001d036758_P002	Maize	extracellular	42.16	74.78
Zm00001d046600_P001	Maize	cytosol	82.84	73.48
CDY40889	Canola	mitochondrion	29.41	73.17
HORVU6Hr1G065260.1	Barley	cytosol	16.18	66.0
HORVU7Hr1G115980.1	Barley	plastid	82.35	63.4
GSMUA_Achr10P...	Banana	extracellular	13.24	49.09
Bra017945.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	84.31	40.95
VIT_15s0048g00900.t01	Wine grape	cytosol	25.0	22.87
VIT_01s0146g00300.t01	Wine grape	plastid	20.59	21.88

Protein Annotations

EntrezGene:100250625	wikigene:100250625	MapMan:19.2.6.1.2.3	Gene3D:3.60.20.10	ProteinID:CBI18992	ProteinID:CBI18992.3
UniProt:E0CR38	EMBL:FN595227	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019774	GO:GO:0043161	GO:GO:0051603
InterPro:IPR023333	InterPro:IPR029055	EntrezGene:LOC100250625	wikigene:LOC100250625	InterPro:Ntn_hydrolases_N	PFAM:PF00227
ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF104	InterPro:Proteasome_beta_3	InterPro:Proteasome_bsu_CS
InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	MEROPS:T01.P02	TIGR:TC51946	TIGR:TC52428
UniParc:UPI0001985448	ArrayExpress:VIT_18s0001g02260	EnsemblPlantsGene:VIT_18s0001g02260	EnsemblPlants:VIT_18s0001g02260.t01	RefSeq:XP_002285871	RefSeq:XP_002285871.1

Description

Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:E0CR38]

Coordinates

chr18:+:2618439..2626112

Molecular Weight (calculated)

22921.7 Da

IEP (calculated)

5.110

GRAVY (calculated)

-0.037

Length

204 amino acids

Sequence
(BLAST)

001: MSIFEYNGSA LIAMVGKNCF AIASDRRFGV QLQTVATDFQ KIYRIHDRVF LGLSGLATDA QTLYQRLVFR HKLYQLREER DMKPETFASL VSALLYEKRF
101: GPYFCQPVIA GLGDEDKPFI CTMDSIGAKE LAKDFVVAGT ASESLYGACE AMFKPDMEPE ELFEIISQAL LSSVDRDCLS GWGGHVYVVT PTEVKERILK
201: GRMD

Best Arabidopsis Sequence Match ( AT1G21720.1 )
(BLAST)

001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDRVF IGLSGLATDV QTLYQRLVFR HKLYQLREER DMKPETFASL VSAILYEKRF
101: GPYLCQPVIA GLGDDDKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMYKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYIVT PTEIKERILK
201: GRMD

Arabidopsis Description

PBC1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178WJZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.