Factsheet for VIT_15s0048g00900.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0179g00350.t01
VIT_04s0008g01350.t01
VIT_05s0020g04480.t01
VIT_16s0098g00600.t01
VIT_17s0000g07350.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60820.1	VIT_00s0179g00350.t01	AT3G22960.1	21798944
AT3G60820.1	VIT_05s0020g04480.t01	AT3G22960.1	21798944
AT3G60820.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944
AT3G60820.1	VIT_04s0008g01350.t01	AT5G11980.1	21798944
AT3G60820.1	VIT_16s0098g00600.t01	AT5G24660.1	21798944
AT3G60820.1	VIT_17s0000g07350.t01	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99348	Soybean	nucleus	94.62	94.62
KRH45659	Soybean	endoplasmic reticulum, nucleus	94.17	94.17
Solyc02g084920.2.1	Tomato	plastid	93.72	93.72
PGSC0003DMT400009060	Potato	cytosol	93.27	93.27
PGSC0003DMT400058139	Potato	cytosol	91.03	91.03
Bra003428.1-P	Field mustard	cytosol	88.34	88.34
Bra007565.1-P	Field mustard	cytosol	88.34	88.34
Bra014468.1-P	Field mustard	cytosol	87.89	87.89
AT3G60820.1	Thale cress	cytosol	86.1	86.1
Zm00001d011021_P001	Maize	cytosol, extracellular, mitochondrion, plastid	30.94	84.15
GSMUA_Achr11P...	Banana	cytosol	81.61	82.35
GSMUA_Achr5P18150_001	Banana	cytosol, mitochondrion, peroxisome, plastid	55.16	82.0
GSMUA_Achr2P00960_001	Banana	plasma membrane	81.17	81.9
Os09t0505600-01	Rice	plastid	80.27	81.0
Zm00001d021051_P002	Maize	mitochondrion	80.27	81.0
Zm00001d006085_P002	Maize	extracellular	80.27	81.0
TraesCS5A01G285600.1	Wheat	plastid	79.82	80.54
TraesCS5B01G284800.1	Wheat	cytosol	79.82	80.54
TraesCS5D01G292900.1	Wheat	cytosol	79.82	80.54
OQU89746	Sorghum	cytosol	66.37	80.0
EES15319	Sorghum	cytosol	75.34	76.71
Zm00001d031599_P001	Maize	cytosol, extracellular	75.34	76.71
Os08t0529100-01	Rice	cytosol	74.89	76.26
HORVU5Hr1G076130.2	Barley	plastid	79.82	68.99
VIT_01s0146g00300.t01	Wine grape	plastid	55.61	64.58
GSMUA_AchrUn_...	Banana	extracellular	29.15	62.5
Zm00001d018456_P001	Maize	cytosol	28.7	59.26
Zm00001d043281_P001	Maize	cytosol	28.7	59.26
VIT_18s0001g02260.t01	Wine grape	cytosol	22.87	25.0

Protein Annotations

EntrezGene:100266090	wikigene:100266090	MapMan:19.2.6.1.2.6	Gene3D:3.60.20.10	ProteinID:CBI38855	ProteinID:CBI38855.3
UniProt:D7U7S6	EMBL:FN596739	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055
EntrezGene:LOC100266090	wikigene:LOC100266090	InterPro:Ntn_hydrolases_N	PFAM:PF00227	ScanProsite:PS00854	PFscan:PS51476
PANTHER:PTHR11599	PANTHER:PTHR11599:SF107	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235
MEROPS:T01.986	TIGR:TC67872	UniParc:UPI00015CB1EF	ArrayExpress:VIT_15s0048g00900	EnsemblPlantsGene:VIT_15s0048g00900	EnsemblPlants:VIT_15s0048g00900.t01
RefSeq:XP_002279266	RefSeq:XP_002279266.1	SEG:seg	:	:	:

Description

Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:D7U7S6]

Coordinates

chr15:+:15054735..15058540

Molecular Weight (calculated)

24629.4 Da

IEP (calculated)

7.362

GRAVY (calculated)

-0.200

Length

223 amino acids

Sequence
(BLAST)

001: MTKQQANWSP YDNNGGSCVA IAGADYCVIA ADTRMSTGYN ILTRDYSKIC KLADKCVMAS SGFQADVRAL QKHLAARHLI YQHQHNKQMS CPAMAQLLSN
101: TLYYKRFFPY YSFNVLGGLD NEGKGCVFTY DAVGSYEKVG YSSQGSGSTL IMPFLDNQLK SPSPLLLPAL DAVTPLSEPE AVDLVKTVFA SATERDIYTG
201: DKLEIVILNA SGIRREYMDL RKD

Best Arabidopsis Sequence Match ( AT3G60820.3 )
(BLAST)

001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADRAVLSS SGFQADVKAL QKVLKSRHLI YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD

Arabidopsis Description

PBF1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178V6R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.