CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92716
EER95951
KXG33434
KXG37365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60820.1	EER95951	AT3G22960.1	21798944
AT3G60820.1	KXG37365	AT3G22960.1	21798944
AT3G60820.1	EER92716	AT5G11980.1	21798944
AT3G60820.1	KXG33434	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031599_P001	Maize	cytosol, extracellular	96.35	96.35
Os08t0529100-01	Rice	cytosol	91.78	91.78
OQU89746	Sorghum	cytosol	71.69	84.86
GSMUA_Achr11P...	Banana	cytosol	79.45	78.73
GSMUA_Achr5P18150_001	Banana	cytosol, mitochondrion, peroxisome, plastid	53.88	78.67
GSMUA_Achr2P00960_001	Banana	plasma membrane	78.54	77.83
KRH45659	Soybean	endoplasmic reticulum, nucleus	78.08	76.68
KRG99348	Soybean	nucleus	78.08	76.68
PGSC0003DMT400009060	Potato	cytosol	77.17	75.78
VIT_15s0048g00900.t01	Wine grape	cytosol	76.71	75.34
Solyc02g084920.2.1	Tomato	plastid	76.71	75.34
Bra003428.1-P	Field mustard	cytosol	75.34	73.99
Bra007565.1-P	Field mustard	cytosol	75.34	73.99
CDY52345	Canola	cytosol	75.34	73.99
CDX67842	Canola	cytosol	75.34	73.99
CDX71775	Canola	cytosol	75.34	73.99
CDY56729	Canola	cytosol	74.89	73.54
PGSC0003DMT400058139	Potato	cytosol	74.89	73.54
CDX71344	Canola	cytosol	74.89	73.54
CDX89080	Canola	cytosol	74.89	73.54
Bra014468.1-P	Field mustard	cytosol	74.43	73.09
AT3G60820.1	Thale cress	cytosol	73.97	72.65
GSMUA_AchrUn_...	Banana	extracellular	28.77	60.58
CDX95297	Canola	cytosol	31.51	50.37
VIT_01s0146g00300.t01	Wine grape	plastid	41.1	46.88
CDY46344	Canola	endoplasmic reticulum	46.12	38.26
CDY07280	Canola	endoplasmic reticulum, plasma membrane	32.88	35.29
EER90101	Sorghum	cytosol	22.37	24.02
EES06388	Sorghum	cytosol	21.46	23.04

Protein Annotations

MapMan:19.2.6.1.2.6	Gene3D:3.60.20.10	EntrezGene:8060957	UniProt:C5YI35	EnsemblPlants:EES15319	ProteinID:EES15319
ProteinID:EES15319.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055	InterPro:Ntn_hydrolases_N
PFAM:PF00227	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF55	InterPro:Proteasome_beta1
InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	EnsemblPlantsGene:SORBI_3007G195100	SUPFAM:SSF56235	unigene:Sbi.18342
UniParc:UPI0001A87844	RefSeq:XP_002445824.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:62730285..62732941

Molecular Weight (calculated)

23821.3 Da

IEP (calculated)

5.730

GRAVY (calculated)

-0.128

Length

219 amino acids

Sequence
(BLAST)

001: MARFDPYENN GGTCVAVAGA DYCVVAADTR LSVGYSILSR DHSKIAQLAD KCVLASSGFQ GDIKALQKAL TAKELIYEHN NNKKMSCPAM AQLLSNTLYY
101: KRFFPYYAFN VLAGLDTQGK GCVFTYDAVG SYERTGYSAQ GTGSALMMPV LDNQLKSPSP LLLPARDAVT PLSESDAVDL VKDVFASATE RDIYTGDRLE
201: IVVINSSGTH RECIELRKD

Best Arabidopsis Sequence Match ( AT3G60820.3 )
(BLAST)

001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADRAVLSS SGFQADVKAL QKVLKSRHLI YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD

Arabidopsis Description

PBF1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178V6R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.