Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400009060 | Potato | cytosol | 93.72 | 93.72 |
| VIT_15s0048g00900.t01 | Wine grape | cytosol | 91.03 | 91.03 |
| KRG99348 | Soybean | nucleus | 89.69 | 89.69 |
| KRH45659 | Soybean | endoplasmic reticulum, nucleus | 89.24 | 89.24 |
| Bra003428.1-P | Field mustard | cytosol | 86.55 | 86.55 |
| Bra014468.1-P | Field mustard | cytosol | 86.55 | 86.55 |
| Bra007565.1-P | Field mustard | cytosol | 86.55 | 86.55 |
| Zm00001d011021_P001 | Maize | cytosol, extracellular, mitochondrion, plastid | 31.39 | 85.37 |
| AT3G60820.1 | Thale cress | cytosol | 85.2 | 85.2 |
| Zm00001d006085_P002 | Maize | extracellular | 79.82 | 80.54 |
| Zm00001d021051_P002 | Maize | mitochondrion | 79.82 | 80.54 |
| GSMUA_Achr11P... | Banana | cytosol | 79.37 | 80.09 |
| GSMUA_Achr5P18150_001 | Banana | cytosol, mitochondrion, peroxisome, plastid | 53.81 | 80.0 |
| GSMUA_Achr2P00960_001 | Banana | plasma membrane | 78.92 | 79.64 |
| OQU89746 | Sorghum | cytosol | 65.92 | 79.46 |
| Os09t0505600-01 | Rice | plastid | 78.48 | 79.19 |
| TraesCS5D01G292900.1 | Wheat | cytosol | 78.03 | 78.73 |
| TraesCS5A01G285600.1 | Wheat | plastid | 78.03 | 78.73 |
| TraesCS5B01G284800.1 | Wheat | cytosol | 78.03 | 78.73 |
| Os08t0529100-01 | Rice | cytosol | 75.34 | 76.71 |
| EES15319 | Sorghum | cytosol | 73.54 | 74.89 |
| Zm00001d031599_P001 | Maize | cytosol, extracellular | 73.09 | 74.43 |
| HORVU5Hr1G076130.2 | Barley | plastid | 78.03 | 67.44 |
| Zm00001d018456_P001 | Maize | cytosol | 30.04 | 62.04 |
| Zm00001d043281_P001 | Maize | cytosol | 30.04 | 62.04 |
| GSMUA_AchrUn_... | Banana | extracellular | 28.7 | 61.54 |
| CDY46344 | Canola | endoplasmic reticulum | 50.67 | 42.8 |
| PGSC0003DMT400082475 | Potato | cytosol | 22.42 | 24.51 |
Protein Annotations
| EntrezGene:102595078 | MapMan:19.2.6.1.2.6 | Gene3D:3.60.20.10 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004175 | GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005839 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0051603 | InterPro:IPR023333 |
| InterPro:IPR029055 | UniProt:M1C263 | InterPro:Ntn_hydrolases_N | PFAM:PF00227 | EnsemblPlantsGene:PGSC0003DMG400022569 | PGSC:PGSC0003DMG400022569 |
| EnsemblPlants:PGSC0003DMT400058139 | ScanProsite:PS00854 | PFscan:PS51476 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF107 | InterPro:Proteasome_bsu_CS |
| InterPro:Proteasome_suB-type | InterPro:Proteasome_sua/b | SUPFAM:SSF56235 | MEROPS:T01.986 | UniParc:UPI000296FBEE | RefSeq:XP_006343387.1 |
| SEG:seg | : | : | : | : | : |
Description
Proteasome subunit beta type-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400022569]
Coordinates
chr3:-:3920785..3925080
Molecular Weight (calculated)
24603.3 Da
IEP (calculated)
6.748
GRAVY (calculated)
-0.226
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKQQANWSP YDNNGGTCVA IAGADYCVIA ADTRMSTGYN ILTRDYSKII KLADKCVLAS SGFQADVRAL QKVLAARHLT YQHQHNKQMS CPAMGQLLSN
101: TLYYKRFFPY YAFNVLGGLD SEGKGCVFTY DAVGSYERVG YSSQGSGATL IMPFLDNQLK SPSPLLLPAK DAVTPLSESE AIDLVKTCFA SATERDIYTG
201: DKLEMLILNA DGVRREEMDL RRD
101: TLYYKRFFPY YAFNVLGGLD SEGKGCVFTY DAVGSYERVG YSSQGSGATL IMPFLDNQLK SPSPLLLPAK DAVTPLSESE AIDLVKTCFA SATERDIYTG
201: DKLEMLILNA DGVRREEMDL RRD
001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADRAVLSS SGFQADVKAL QKVLKSRHLI YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD
Arabidopsis Description
PBF1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178V6R9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.