Factsheet for Zm00001d011021_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular, cytosol

Predictor Summary:

plastid 2
cytosol 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006805_P001
Zm00001d018961_P002
Zm00001d028871_P001
Zm00001d034443_P001
Zm00001d043365_P001
Zm00001d053677_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60820.1	Zm00001d018961_P002	AT3G22960.1	21798944
AT3G60820.1	Zm00001d034443_P001	AT3G22960.1	21798944
AT3G60820.1	Zm00001d006805_P001	AT5G11980.1	21798944
AT3G60820.1	Zm00001d028871_P001	AT5G11980.1	21798944
AT3G60820.1	Zm00001d053677_P001	AT5G11980.1	21798944
AT3G60820.1	Zm00001d043365_P001	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P18150_001	Banana	cytosol, mitochondrion, peroxisome, plastid	82.93	45.33
OQU89746	Sorghum	cytosol	91.46	40.54
Zm00001d021051_P002	Maize	mitochondrion	92.68	34.39
Os09t0505600-01	Rice	plastid	92.68	34.39
Zm00001d006085_P002	Maize	extracellular	91.46	33.94
Zm00001d031599_P001	Maize	cytosol, extracellular	87.8	32.88
TraesCS5D01G292900.1	Wheat	cytosol	87.8	32.58
TraesCS5B01G284800.1	Wheat	cytosol	87.8	32.58
TraesCS5A01G285600.1	Wheat	plastid	87.8	32.58
KRH45659	Soybean	endoplasmic reticulum, nucleus	86.59	31.84
KRG99348	Soybean	nucleus	86.59	31.84
CDY52345	Canola	cytosol	85.37	31.39
PGSC0003DMT400058139	Potato	cytosol	85.37	31.39
CDX71775	Canola	cytosol	85.37	31.39
Bra007565.1-P	Field mustard	cytosol	85.37	31.39
GSMUA_Achr11P...	Banana	cytosol	84.15	31.22
PGSC0003DMT400009060	Potato	cytosol	84.15	30.94
Solyc02g084920.2.1	Tomato	plastid	84.15	30.94
VIT_15s0048g00900.t01	Wine grape	cytosol	84.15	30.94
Bra003428.1-P	Field mustard	cytosol	84.15	30.94
CDY56729	Canola	cytosol	84.15	30.94
CDX89080	Canola	cytosol	84.15	30.94
AT3G60820.1	Thale cress	cytosol	84.15	30.94
CDX71344	Canola	cytosol	84.15	30.94
CDX67842	Canola	cytosol	84.15	30.94
Bra014468.1-P	Field mustard	cytosol	84.15	30.94
GSMUA_Achr2P00960_001	Banana	plasma membrane	82.93	30.77
HORVU5Hr1G076130.2	Barley	plastid	87.8	27.91
Zm00001d043281_P001	Maize	cytosol	35.37	26.85
Zm00001d018456_P001	Maize	cytosol	35.37	26.85
CDY46344	Canola	endoplasmic reticulum	80.49	25.0
CDX95297	Canola	cytosol	37.8	22.63
VIT_01s0146g00300.t01	Wine grape	plastid	45.12	19.27
CDY07280	Canola	endoplasmic reticulum, plasma membrane	42.68	17.16
Zm00001d036758_P002	Maize	extracellular	19.51	13.91
Zm00001d015526_P002	Maize	cytosol	26.83	10.38
Zm00001d046600_P001	Maize	cytosol	26.83	9.57
Zm00001d036756_P001	Maize	cytosol	10.98	9.09
GSMUA_AchrUn_...	Banana	extracellular	6.1	4.81

Protein Annotations

MapMan:19.2.6.1.2.6	Gene3D:3.60.20.10	UniProt:A0A1D6FVJ7	ProteinID:AQK95465.1	GO:GO:0000502	GO:GO:0003674
GO:GO:0003824	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005839
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0051603	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PANTHER:PTHR11599	PANTHER:PTHR11599:SF55
InterPro:Proteasome_beta1	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI0008439740	EnsemblPlantsGene:Zm00001d011021	EnsemblPlants:Zm00001d011021_P001
EnsemblPlants:Zm00001d011021_T001	:	:	:	:	:

Description

Proteasome subunit beta type-1

Coordinates

chr8:-:136978415..136978950

Molecular Weight (calculated)

9024.9 Da

IEP (calculated)

9.079

GRAVY (calculated)

0.032

Length

82 amino acids

Sequence
(BLAST)

1: MSCPAMAQLL SNTLYYKRFF PYYAFNVLGG LDSEGKGCVF TYDAVGSYER TGYSAQGTGS ILIMSVLNNQ LKSPRPLLLP AR

Best Arabidopsis Sequence Match ( AT3G60820.1 )
(BLAST)

001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADRAVLSS SGFQADVKAL QKVLKSRHLI YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD

Arabidopsis Description

PBF1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178V6R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.