Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60820.1 | EER95951 | AT3G22960.1 | 21798944 |
| AT3G60820.1 | KXG37365 | AT3G22960.1 | 21798944 |
| AT3G60820.1 | EER92716 | AT5G11980.1 | 21798944 |
| AT3G60820.1 | KXG33434 | AT5G61010.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d011021_P001 | Maize | cytosol, extracellular, mitochondrion, plastid | 40.54 | 91.46 |
| Zm00001d021051_P002 | Maize | mitochondrion | 98.38 | 82.35 |
| Zm00001d006085_P002 | Maize | extracellular | 97.3 | 81.45 |
| Os09t0505600-01 | Rice | plastid | 96.76 | 81.0 |
| GSMUA_Achr5P18150_001 | Banana | cytosol, mitochondrion, peroxisome, plastid | 64.86 | 80.0 |
| TraesCS5D01G292900.1 | Wheat | cytosol | 94.59 | 79.19 |
| TraesCS5B01G284800.1 | Wheat | cytosol | 94.59 | 79.19 |
| TraesCS5A01G285600.1 | Wheat | plastid | 94.59 | 79.19 |
| EES15319 | Sorghum | cytosol | 84.86 | 71.69 |
| GSMUA_Achr11P... | Banana | cytosol | 84.86 | 71.04 |
| GSMUA_Achr2P00960_001 | Banana | plasma membrane | 83.78 | 70.14 |
| Zm00001d043281_P001 | Maize | cytosol | 40.0 | 68.52 |
| Zm00001d018456_P001 | Maize | cytosol | 40.0 | 68.52 |
| HORVU5Hr1G076130.2 | Barley | plastid | 94.59 | 67.83 |
| KRG99348 | Soybean | nucleus | 80.54 | 66.82 |
| PGSC0003DMT400009060 | Potato | cytosol | 80.54 | 66.82 |
| Solyc02g084920.2.1 | Tomato | plastid | 80.0 | 66.37 |
| KRH45659 | Soybean | endoplasmic reticulum, nucleus | 80.0 | 66.37 |
| VIT_15s0048g00900.t01 | Wine grape | cytosol | 80.0 | 66.37 |
| PGSC0003DMT400058139 | Potato | cytosol | 79.46 | 65.92 |
| CDX71775 | Canola | cytosol | 77.3 | 64.13 |
| CDY52345 | Canola | cytosol | 77.3 | 64.13 |
| Bra007565.1-P | Field mustard | cytosol | 77.3 | 64.13 |
| CDX71344 | Canola | cytosol | 76.76 | 63.68 |
| CDX89080 | Canola | cytosol | 76.76 | 63.68 |
| CDX67842 | Canola | cytosol | 76.76 | 63.68 |
| Bra014468.1-P | Field mustard | cytosol | 76.76 | 63.68 |
| Bra003428.1-P | Field mustard | cytosol | 76.76 | 63.68 |
| CDY56729 | Canola | cytosol | 76.22 | 63.23 |
| AT3G60820.1 | Thale cress | cytosol | 75.68 | 62.78 |
| CDX95297 | Canola | cytosol | 36.22 | 48.91 |
| VIT_01s0146g00300.t01 | Wine grape | plastid | 39.46 | 38.02 |
| CDY46344 | Canola | endoplasmic reticulum | 52.43 | 36.74 |
| CDY07280 | Canola | endoplasmic reticulum, plasma membrane | 40.0 | 36.27 |
| GSMUA_AchrUn_... | Banana | extracellular | 20.0 | 35.58 |
| EER90101 | Sorghum | cytosol | 23.24 | 21.08 |
| EES06388 | Sorghum | cytosol | 22.16 | 20.1 |
Protein Annotations
| MapMan:19.2.6.1.2.6 | Gene3D:3.60.20.10 | UniProt:A0A1W0W5X7 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004298 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005839 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0051603 | InterPro:IPR023333 |
| InterPro:IPR029055 | InterPro:Ntn_hydrolases_N | EnsemblPlants:OQU89746 | ProteinID:OQU89746 | ProteinID:OQU89746.1 | PFAM:PF00227 |
| PFscan:PS51476 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF55 | InterPro:Proteasome_beta1 | InterPro:Proteasome_suB-type | InterPro:Proteasome_sua/b |
| EnsemblPlantsGene:SORBI_3002G257400 | SUPFAM:SSF56235 | UniParc:UPI0009DC8D40 | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:64310935..64314102
Molecular Weight (calculated)
20548.5 Da
IEP (calculated)
7.427
GRAVY (calculated)
-0.354
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRGDWVYE NNGGADKCVL ASSGFQGDIK ALHKNLAARE LLYQHQHNKR MSCPAMAQLL SNTLYYKRFF PYYAFNVLGG LDSEGKGCVF TYDAVGSYER
101: TGYSAQGTGS TLMMPVLDNQ LKSPSPLLLP ARDAVTPLSE SEAIDLVKDV FASATERDIY TGDKLEIVVI NKAGTKREYI ELRKD
101: TGYSAQGTGS TLMMPVLDNQ LKSPSPLLLP ARDAVTPLSE SEAIDLVKDV FASATERDIY TGDKLEIVVI NKAGTKREYI ELRKD
001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADRAVLSS SGFQADVKAL QKVLKSRHLI YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD
Arabidopsis Description
PBF1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178V6R9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.