Factsheet for VIT_01s0146g00300.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0179g00350.t01
VIT_04s0008g01350.t01
VIT_05s0020g04480.t01
VIT_16s0098g00600.t01
VIT_17s0000g07350.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60820.1	VIT_00s0179g00350.t01	AT3G22960.1	21798944
AT3G60820.1	VIT_05s0020g04480.t01	AT3G22960.1	21798944
AT3G60820.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944
AT3G60820.1	VIT_04s0008g01350.t01	AT5G11980.1	21798944
AT3G60820.1	VIT_16s0098g00600.t01	AT5G24660.1	21798944
AT3G60820.1	VIT_17s0000g07350.t01	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	extracellular	30.73	56.73
VIT_15s0048g00900.t01	Wine grape	cytosol	64.58	55.61
Bra003428.1-P	Field mustard	cytosol	55.73	47.98
Bra007565.1-P	Field mustard	cytosol	55.73	47.98
Bra014468.1-P	Field mustard	cytosol	55.21	47.53
AT3G60820.1	Thale cress	cytosol	55.21	47.53
GSMUA_Achr11P...	Banana	cytosol	53.65	46.61
GSMUA_Achr2P00960_001	Banana	plasma membrane	53.65	46.61
Zm00001d043281_P001	Maize	cytosol	25.52	45.37
Zm00001d018456_P001	Maize	cytosol	25.52	45.37
TraesCS5A01G285600.1	Wheat	plastid	52.08	45.25
TraesCS5B01G284800.1	Wheat	cytosol	52.08	45.25
TraesCS5D01G292900.1	Wheat	cytosol	52.08	45.25
Zm00001d011021_P001	Maize	cytosol, extracellular, mitochondrion, plastid	19.27	45.12
Zm00001d006085_P002	Maize	extracellular	51.56	44.8
Os09t0505600-01	Rice	plastid	51.04	44.34
Zm00001d021051_P002	Maize	mitochondrion	51.04	44.34
Os08t0529100-01	Rice	cytosol	47.92	42.01
EES15319	Sorghum	cytosol	46.88	41.1
Zm00001d031599_P001	Maize	cytosol, extracellular	46.88	41.1
HORVU5Hr1G076130.2	Barley	plastid	53.65	39.92
OQU89746	Sorghum	cytosol	38.02	39.46
GSMUA_Achr5P18150_001	Banana	cytosol, mitochondrion, peroxisome, plastid	26.04	33.33
CDY46344	Canola	endoplasmic reticulum	39.06	28.41
VIT_18s0001g02260.t01	Wine grape	cytosol	21.88	20.59

Protein Annotations

MapMan:19.2.6.1.2.6	Gene3D:3.60.20.10	ProteinID:CCB60856	ProteinID:CCB60856.1	UniProt:F6I1N9	EMBL:FN596513
GO:GO:0003674	GO:GO:0003824	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005839	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR029055	InterPro:Ntn_hydrolases_N
PFAM:PF00227	PANTHER:PTHR11599	PANTHER:PTHR11599:SF107	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	MEROPS:T01.986
UniParc:UPI000210A5AA	ArrayExpress:VIT_01s0146g00300	EnsemblPlantsGene:VIT_01s0146g00300	EnsemblPlants:VIT_01s0146g00300.t01	:	:

Description

No Description!

Coordinates

chr1:+:22117367..22118070

Molecular Weight (calculated)

21333.0 Da

IEP (calculated)

9.759

GRAVY (calculated)

-0.060

Length

192 amino acids

Sequence
(BLAST)

001: MKAKASAAGK RVPTGLQTKS SSALISLAVS FHFTMTKQQA NWSLYNNNGG SCVAIAGADY CVITSGTRMS IGYNILTCDY SKICKLADKC VMASSGFQAD
101: VRALQKHLAA RQLIYQHQHN KQMSCPAMAQ LLSNTLYYKR FFPYYSFNVL GGLDNEGKGW VLPRCCHPLS PFPKPTYSFC LFISMHAHIR MY

Best Arabidopsis Sequence Match ( AT3G60820.3 )
(BLAST)

001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADRAVLSS SGFQADVKAL QKVLKSRHLI YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD

Arabidopsis Description

PBF1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178V6R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.