Factsheet for VIT_05s0020g04480.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g00730.t01
VIT_02s0087g00270.t01
VIT_05s0094g01550.t01
VIT_07s0141g00610.t01
VIT_08s0056g00160.t01
VIT_11s0016g05420.t01
VIT_13s0067g02060.t01
VIT_14s0030g01680.t01
VIT_14s0066g01070.t01
VIT_14s0219g00290.t01
VIT_18s0001g10030.t01
VIT_18s0001g13060.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22960.1	VIT_18s0001g13060.t01	AT1G19680.1	21798944
AT3G22960.1	VIT_01s0026g00730.t01	AT1G60010.1	21798944
AT3G22960.1	VIT_02s0087g00270.t01	AT1G61590.1	21798944
AT3G22960.1	VIT_07s0141g00610.t01	AT2G30580.1	21798944
AT3G22960.1	VIT_14s0219g00290.t01	AT3G01690.1	21798944
AT3G22960.1	VIT_13s0067g02060.t01	AT3G56130.1	21798944
AT3G22960.1	VIT_05s0094g01550.t01	AT3G59920.1	21798944
AT3G22960.1	VIT_08s0056g00160.t01	AT3G60360.1	21798944
AT3G22960.1	VIT_18s0001g10030.t01	AT4G24240.1	21798944
AT3G22960.1	VIT_14s0030g01680.t01	AT5G04600.1	21798944
AT3G22960.1	VIT_14s0219g00290.t01	AT5G14390.1	21798944
AT3G22960.1	VIT_14s0066g01070.t01	AT5G14660.1	21798944
AT3G22960.1	VIT_11s0016g05420.t01	AT5G35410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P16760_001	Banana	cytosol	24.74	91.19
GSMUA_Achr2P17520_001	Banana	cytosol	64.68	90.67
KRG92440	Soybean	cytosol, nucleus	70.14	90.53
GSMUA_Achr4P28510_001	Banana	cytosol	63.14	88.52
GSMUA_Achr4P21110_001	Banana	cytosol	63.14	88.52
KRH34357	Soybean	nucleus	71.67	88.42
Bra001896.1-P	Field mustard	plastid	77.99	80.89
Solyc09g082970.2.1	Tomato	plastid	81.06	80.1
CDY35484	Canola	plastid	78.84	80.07
Bra023780.1-P	Field mustard	plastid	78.84	80.07
CDY40829	Canola	plastid	78.67	79.9
Os07t0181000-01	Rice	plastid	76.28	79.68
AT3G22960.1	Thale cress	plastid	80.38	79.03
CDX92969	Canola	plastid	77.3	78.78
CDX94878	Canola	plastid	77.3	77.97
EER95951	Sorghum	plastid	76.28	76.67
Zm00001d034443_P001	Maize	plastid	75.09	76.66
TraesCS2A01G240200.1	Wheat	plastid	74.4	76.49
KXG37365	Sorghum	plastid	75.43	76.47
TraesCS2D01G237900.1	Wheat	plastid	74.23	76.32
VIT_00s0179g00350.t01	Wine grape	plastid	71.5	73.64
Zm00001d018961_P002	Maize	plastid	75.94	71.89
HORVU2Hr1G050140.1	Barley	plastid	73.72	71.52
TraesCS2B01G257800.1	Wheat	plastid	72.7	69.04
VIT_03s0088g00410.t01	Wine grape	plastid	53.41	54.62
VIT_16s0050g02180.t01	Wine grape	plastid	38.57	39.24
VIT_02s0012g01170.t01	Wine grape	plastid	37.71	38.64
VIT_06s0004g00130.t01	Wine grape	cytosol	26.28	30.43
VIT_10s0071g01060.t01	Wine grape	cytosol	26.45	30.39
VIT_08s0007g07600.t01	Wine grape	cytosol, mitochondrion, plastid	25.77	30.2
VIT_08s0056g00190.t01	Wine grape	cytosol	26.11	30.0
VIT_08s0007g05490.t01	Wine grape	cytosol	21.16	25.15
VIT_08s0007g04170.t01	Wine grape	plastid	21.67	24.71
VIT_13s0074g00210.t01	Wine grape	cytosol, plastid	20.99	23.34
VIT_08s0007g05430.t01	Wine grape	endoplasmic reticulum, extracellular	5.46	18.29
VIT_16s0050g02660.t01	Wine grape	plastid	16.55	12.8

Protein Annotations

KEGG:00010+2.7.1.40	KEGG:00230+2.7.1.40	KEGG:00620+2.7.1.40	EntrezGene:100246052	wikigene:100246052	Gene3D:2.40.33.10
MapMan:3.12.8	Gene3D:3.20.20.60	Gene3D:3.40.1380.20	MapMan:5.1.2.1	EMBL:AM441755	ProteinID:CAN78507
ProteinID:CAN78507.1	ProteinID:CCB50482	ProteinID:CCB50482.1	UniProt:F6HDW1	EMBL:FN595749	GO:GO:0000287
GO:GO:0003674	GO:GO:0003824	GO:GO:0004743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009536	GO:GO:0009570
GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0030955	InterPro:IPR015806
InterPro:IPR036918	EntrezGene:LOC100246052	wikigene:LOC100246052	PFAM:PF00224	PFAM:PF02887	PRINTS:PR01050
ScanProsite:PS00110	PANTHER:PTHR11817	PANTHER:PTHR11817:SF14	InterPro:Pyr_Knase	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	InterPro:Pyrv_Knase-like_insert_dom_sf
InterPro:Pyrv_Knase_AS	InterPro:Pyrv_Knase_C	InterPro:Pyrv_Knase_C_sf	InterPro:Pyrv_Knase_brl	InterPro:Pyrv_Knase_insert_dom_sf	SUPFAM:SSF50800
SUPFAM:SSF51621	SUPFAM:SSF52935	TIGRFAMs:TIGR01064	UniParc:UPI00015C7CC2	ArrayExpress:VIT_05s0020g04480	EnsemblPlantsGene:VIT_05s0020g04480
EnsemblPlants:VIT_05s0020g04480.t01	unigene:Vvi.14367	RefSeq:XP_002279975	RefSeq:XP_002279975.1	RefSeq:XP_003631998	RefSeq:XP_003631998.1
SEG:seg	:	:	:	:	:

Description

Pyruvate kinase [Source:UniProtKB/TrEMBL;Acc:F6HDW1]

Coordinates

chr5:+:6284108..6299065

Molecular Weight (calculated)

64490.3 Da

IEP (calculated)

5.924

GRAVY (calculated)

-0.156

Length

586 amino acids

Sequence
(BLAST)

001: MSQSLHFVVS SSRSPNLTLP NHSYLKLSPP PSNLRFPVTF ARRPISASSS DLDSNSPSKV LVSDNGKGGV LPATSPEYVP PPSDSSSIDV DAVTETDLKE
101: NGFRSTRRTK LVCTIGPATC GFEQLEALAV GGMNVARINM CHGTREWHRR VIERVRRLNE EKGFAVAIMM DTEGSEIHMG ELGGAPSAKA EDGEIWTFSV
201: RAFDSPRPER TINVNYDGFA EDVKVGDELL VDGGMVRFDV IEKIGPDVKC RCTDPGLLLP RANLTFWRDG SLVRERNAML PTISSKDWLD IDFGIAEGVD
301: FIAISFVKSA EVIKHLKSYI AARSRDSDIA VIAKIESIDS LKNLEEIIQA SDGAMVARGD LGAQIPLEQV PSAQQRIVQQ CRHLNKPVIV ASQLLESMIE
401: YPTPTRAEVA DVSEAVRQRA DALMLSGESA MGLFPEKALA VLRSVSVRIE KWWREEKRHE AMELPDTASS FSDSISEQIC NSAAKMANNL AVDALFVYTK
501: TGHMASLLSR CRPDCPIFAF TSTISVRRRL NLQWGLIPFR LSFSDDMESN LNRTFSLLKA RGMIKSGDLV IAVSDMLQSI QVMNVP

Best Arabidopsis Sequence Match ( AT3G22960.1 )
(BLAST)

001: MSQSIQFSTP SHTPHLLHLP HSQFNRPLSS ISFRRFPLTT IKYTSIRASS SSSPSPDLDS SSSSSSSQVL LSPNGTGAVK SDERSVVATA VTTDTSGIEV
101: DTVTEAELKE NGFRSTRRTK LICTIGPATC GFEQLEALAV GGMNVARLNM CHGTRDWHRG VIRSVRRLNE EKGFAVAIMM DTEGSEIHMG DLGGEASAKA
201: EDGEVWTFTV RAFDSSRPER TISVSYDGFA EDVRVGDELL VDGGMVRFEV IEKIGPDVKC LCTDPGLLLP RANLTFWRDG SLVRERNAML PTISSKDWLD
301: IDFGIAEGVD FIAVSFVKSA EVINHLKSYL AARSRGGEIG VIAKIESIDS LTNLEEIILA SDGAMVARGD LGAQIPLEQV PAAQQRIVQV CRALNKPVIV
401: ASQLLESMIE YPTPTRAEVA DVSEAVRQRS DALMLSGESA MGQFPDKALT VLRTVSLRIE RWWREEKRHE SVPLQAIGSS FSDKISEEIC NSAAKMANNL
501: GVDAVFVYTT SGHMASLVSR CRPDCPIFAF TTTTSVRRRL NLQWGLIPFR LSFSDDMESN LNKTFSLLKS RGMIKSGDLV IAVSDMLQSI QVMNVP

Arabidopsis Description

PKP1Plastidial pyruvate kinase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LIK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.