Factsheet for VIT_14s0066g01070.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G225700.1	Wheat	cytosol	37.82	64.6
PGSC0003DMT400001396	Potato	plastid	64.36	63.9
Solyc02g086680.2.1	Tomato	plastid	64.36	63.44
KRG94095	Soybean	mitochondrion, plastid	61.09	62.92
CDY09874	Canola	plastid	59.64	59.64
AT5G14660.1	Thale cress	plastid	58.91	59.34
Bra008747.1-P	Field mustard	plastid	59.64	59.21
CDX69568	Canola	plastid	59.27	58.63
GSMUA_Achr1P04750_001	Banana	plastid	58.91	58.06
Os01t0637600-01	Rice	mitochondrion	53.45	54.65
EES03332	Sorghum	mitochondrion	51.64	53.79
KRG94880	Soybean	plastid	38.91	53.77
Zm00001d011445_P006	Maize	mitochondrion	49.82	51.89
TraesCS3B01G258700.1	Wheat	plastid	50.18	51.11
TraesCS3D01G223800.1	Wheat	mitochondrion	49.82	50.74
Os01t0636600-01	Rice	plastid	47.27	48.33
VIT_09s0002g06390.t01	Wine grape	cytosol, plastid	22.18	22.02

Protein Annotations

EntrezGene:100250707	wikigene:100250707	MapMan:17.7.6.1	Gene3D:3.90.45.10	ProteinID:CBI34903	ProteinID:CBI34903.3
UniProt:D7TWM8	EMBL:FN596252	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006412	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016787	GO:GO:0018206	GO:GO:0019538	GO:GO:0031365	GO:GO:0042586	GO:GO:0043686
GO:GO:0046872	InterPro:IPR036821	EntrezGene:LOC100250707	wikigene:LOC100250707	HAMAP:MF_00163	PFAM:PF01327
PRINTS:PR01576	PANTHER:PTHR10458	PANTHER:PTHR10458:SF2	InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf	SUPFAM:SSF56420
TIGRFAMs:TIGR00079	UniParc:UPI00015CA1A2	ArrayExpress:VIT_14s0066g01070	EnsemblPlantsGene:VIT_14s0066g01070	EnsemblPlants:VIT_14s0066g01070.t01	RefSeq:XP_002276964
RefSeq:XP_002276964.1	RefSeq:XP_010660898.1	RefSeq:XP_010660900.1	:	:	:

Description

Peptide deformylase [Source:UniProtKB/TrEMBL;Acc:D7TWM8]

Coordinates

chr14:-:27511622..27524855

Molecular Weight (calculated)

31212.6 Da

IEP (calculated)

8.792

GRAVY (calculated)

-0.264

Length

275 amino acids

Sequence
(BLAST)

001: MAFASCLHSS YLSNTFLPIL RHRSALSTST SHLHRFCSPS RFFSSANRFR LPLMQVQVQA KRGFSFKEEV IASPADLSFE APLKIVEYPD PILRAKNKLI
101: STFDDNLKKL VDEMFDVMYK TDGIGLSAPQ VGINVQLMVF NPVGERGEGE EIVLVNPRVN KYSKKIVLFN EGCLSFPGIY ADVERPESVK IDARDITGAR
201: FMINLSGLPA RVFQHEFDHL QGTLFFDRMT EEVLDSIHAN LQDLERKYED RTGFPSPERI ETRKRRKVAA GFGKS

Best Arabidopsis Sequence Match ( AT5G14660.2 )
(BLAST)

001: MAVCNCFLQA PPLSRILLPV LSRRATTLSA GYGRLKSTVT FCSTVNRTSP LTSSVRAEVK RVSRKDDKVA SATDVQFETP LKIVEYPDPI LRAKNKRIDI
101: FDENLKNLVD AMFDVMYKTD GIGLSAPQVG LNVQLMVFNP AGEPGEGKEI VLVNPKIKKY SDKLVPFDEG CLSFPGIYAE VVRPQSVKID ARDITGERFS
201: ISLSRLPARI FQHEYDHLEG VLFFDRMTDQ VLDSIREELE ALEKKYEEKT GLPSPERVEA RQKRKAGVGF GKR

Arabidopsis Description

PDF1BPeptide deformylase 1B, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FUZ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.