Factsheet for Bra008747.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69568	Canola	plastid	99.28	98.92
AT5G14660.1	Thale cress	plastid	85.56	86.81
TraesCS3A01G225700.1	Wheat	cytosol	36.82	63.35
VIT_14s0066g01070.t01	Wine grape	plastid	59.21	59.64
PGSC0003DMT400001396	Potato	plastid	59.21	59.21
Solyc02g086680.2.1	Tomato	plastid	58.12	57.71
KRG94095	Soybean	mitochondrion, plastid	55.23	57.3
GSMUA_Achr1P04750_001	Banana	plastid	57.4	56.99
EES03332	Sorghum	mitochondrion	52.71	55.3
Zm00001d011445_P006	Maize	mitochondrion	52.35	54.92
Os01t0637600-01	Rice	mitochondrion	52.71	54.28
TraesCS3D01G223800.1	Wheat	mitochondrion	50.9	52.22
TraesCS3B01G258700.1	Wheat	plastid	50.18	51.48
KRG94880	Soybean	plastid	34.66	48.24
Os01t0636600-01	Rice	plastid	46.21	47.58
Bra026766.1-P	Field mustard	mitochondrion	24.55	26.25
Bra026135.1-P	Field mustard	mitochondrion	22.38	23.75

Protein Annotations

MapMan:17.7.6.1	Gene3D:3.90.45.10	EnsemblPlantsGene:Bra008747	EnsemblPlants:Bra008747.1	EnsemblPlants:Bra008747.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0042586	GO:GO:0046872
InterPro:IPR036821	UniProt:M4CX00	HAMAP:MF_00163	PFAM:PF01327	PRINTS:PR01576	PANTHER:PTHR10458
PANTHER:PTHR10458:SF2	InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf	SUPFAM:SSF56420	TIGRFAMs:TIGR00079	UniParc:UPI00025451A8
SEG:seg	:	:	:	:	:

Description

AT5G14660 (E=3e-123) PDF1B, DEF2, ATDEF2 | PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide deformylase

Coordinates

chrA10:+:13681226..13682973

Molecular Weight (calculated)

30831.1 Da

IEP (calculated)

9.054

GRAVY (calculated)

-0.305

Length

277 amino acids

Sequence
(BLAST)

001: MAVCSCFLQA PPFSRFLSPV FSRRAPNLFP GYGQLKSTVM FSSSSSAANR TGPLTSPVRA EVKRVSRKES EIASASDLQF ETPLKIVEYP DPILRAKSKR
101: IGVFDENLKN LADAMFDVMY KTDGIGLSAP QVGLNVQLMV FNPAGESGEG EEIVLVNPKI NKYSDKLVPF NEGCLSFPGI YADVVRPQSV KIDARDITGA
201: RFSISLSRLP ARIFQHEYDH LEGVLFFDRM TDDVLDTIRE ELEALEKKYE EKTGLPSPEK VQARQKRKAG VGFGKRR

Best Arabidopsis Sequence Match ( AT5G14660.2 )
(BLAST)

001: MAVCNCFLQA PPLSRILLPV LSRRATTLSA GYGRLKSTVT FCSTVNRTSP LTSSVRAEVK RVSRKDDKVA SATDVQFETP LKIVEYPDPI LRAKNKRIDI
101: FDENLKNLVD AMFDVMYKTD GIGLSAPQVG LNVQLMVFNP AGEPGEGKEI VLVNPKIKKY SDKLVPFDEG CLSFPGIYAE VVRPQSVKID ARDITGERFS
201: ISLSRLPARI FQHEYDHLEG VLFFDRMTDQ VLDSIREELE ALEKKYEEKT GLPSPERVEA RQKRKAGVGF GKR

Arabidopsis Description

PDF1BPeptide deformylase 1B, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FUZ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.