Factsheet for Os01t0636600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
endoplasmic reticulum 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0637600-01	Rice	mitochondrion	74.35	74.35
TraesCS3A01G225700.1	Wheat	cytosol	42.75	71.43
TraesCS3D01G223800.1	Wheat	mitochondrion	63.57	63.33
TraesCS3B01G258700.1	Wheat	plastid	63.2	62.96
Zm00001d011445_P006	Maize	mitochondrion	59.85	60.98
EES03332	Sorghum	mitochondrion	59.85	60.98
GSMUA_Achr1P04750_001	Banana	plastid	51.67	49.82
VIT_14s0066g01070.t01	Wine grape	plastid	48.33	47.27
CDY09874	Canola	plastid	47.96	46.91
Bra008747.1-P	Field mustard	plastid	47.58	46.21
AT5G14660.1	Thale cress	plastid	46.47	45.79
CDX69568	Canola	plastid	47.21	45.68
PGSC0003DMT400001396	Potato	plastid	44.24	42.96
KRG94095	Soybean	mitochondrion, plastid	42.38	42.7
Solyc02g086680.2.1	Tomato	plastid	43.87	42.29
KRG94880	Soybean	plastid	30.48	41.21
Os01t0555800-01	Rice	plastid	13.38	29.75

Protein Annotations

MapMan:17.7.6.1	Gene3D:3.90.45.10	UniProt:A0A0P0V5Q2	ProteinID:BAS73339.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006412	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016787	GO:GO:0018206	GO:GO:0019538	GO:GO:0031365	GO:GO:0042586	GO:GO:0043686
GO:GO:0046872	InterPro:IPR036821	HAMAP:MF_00163	EnsemblPlantsGene:Os01g0636600	EnsemblPlants:Os01t0636600-01	PFAM:PF01327
PRINTS:PR01576	PANTHER:PTHR10458	PANTHER:PTHR10458:SF2	InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf	SUPFAM:SSF56420
TIGRFAMs:TIGR00079	UniParc:UPI000393A8D7	SEG:seg	:	:	:

Description

Hypothetical conserved gene. (Os01t0636600-01)

Coordinates

chr1:-:25516026..25523268

Molecular Weight (calculated)

29191.3 Da

IEP (calculated)

8.651

GRAVY (calculated)

-0.026

Length

269 amino acids

Sequence
(BLAST)

001: SRAGALPRAG RGKKIGDSPS PPPPWPLAFT SASAPASAGL PLSRTGSVAP LRHGFGSAVV TAPPAEDEDF ATAADLQFEP PLKVVKYPDP ILRARNKRIN
101: TFDDNLRSLT DEMFDVMYKT DGIGLSAPQV GVNVQLMVFN PAGVKGEGEE IVLVNPVVYK MSKRLLVYEE SCLSFPGIYA NVVRPDNVKI DAQDVTGAKI
201: KVKLSGLSAR VFQHEFDHLQ GILFFDRMSL DVLESVREGL KVCKNIIIVQ NNEIASKFYL IAVVNARTV

Best Arabidopsis Sequence Match ( AT5G14660.2 )
(BLAST)

001: MAVCNCFLQA PPLSRILLPV LSRRATTLSA GYGRLKSTVT FCSTVNRTSP LTSSVRAEVK RVSRKDDKVA SATDVQFETP LKIVEYPDPI LRAKNKRIDI
101: FDENLKNLVD AMFDVMYKTD GIGLSAPQVG LNVQLMVFNP AGEPGEGKEI VLVNPKIKKY SDKLVPFDEG CLSFPGIYAE VVRPQSVKID ARDITGERFS
201: ISLSRLPARI FQHEYDHLEG VLFFDRMTDQ VLDSIREELE ALEKKYEEKT GLPSPERVEA RQKRKAGVGF GKR

Arabidopsis Description

PDF1BPeptide deformylase 1B, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FUZ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.