Factsheet for Os01t0555800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
YLoc:	cytosol

plastid: 18718933

plastid: 17189339

gfp PMID: 18718933 doi

S Moon, C Giglione, DY Lee, S An, DH Jeong, T Meinnel, G An

National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Republic of Korea.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P05350_001	Banana	cytosol, mitochondrion	77.69	60.65
KXG36812	Sorghum	plastid	90.08	42.75
Zm00001d022337_P002	Maize	plastid	88.43	41.8
HORVU3Hr1G047870.3	Barley	plastid	85.12	39.77
TraesCS3D01G205000.1	Wheat	plastid	83.47	39.61
TraesCS3A01G204000.1	Wheat	plastid	84.3	39.53
TraesCS3B01G234300.1	Wheat	plastid	83.47	39.15
KRH09750	Soybean	cytosol, mitochondrion	69.42	37.67
KRH44431	Soybean	mitochondrion	76.03	36.51
CDY39642	Canola	mitochondrion	70.25	35.27
PGSC0003DMT400077039	Potato	mitochondrion	76.03	33.33
VIT_09s0002g06390.t01	Wine grape	cytosol, plastid	76.03	33.21
Solyc07g015860.2.1	Tomato	plastid	76.03	33.21
Bra026135.1-P	Field mustard	mitochondrion	71.07	32.95
CDX81711	Canola	mitochondrion	69.42	32.81
CDY36556	Canola	mitochondrion	70.25	32.69
CDY55984	Canola	mitochondrion	69.42	32.68
Bra026766.1-P	Field mustard	mitochondrion	69.42	32.43
AT1G15390.1	Thale cress	plastid	70.25	31.6
KRH33613	Soybean	cytosol	23.14	20.44
Os01t0637600-01	Rice	mitochondrion	32.23	14.5
Os01t0636600-01	Rice	plastid	29.75	13.38
HORVU3Hr1G039820.2	Barley	cytosol, mitochondrion, plastid	2.48	2.1

Protein Annotations

MapMan:17.7.6.1	Gene3D:3.90.45.10	UniProt:A0A0P0V402	ProteinID:BAS72676.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006412	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009505	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016787
GO:GO:0018206	GO:GO:0019538	GO:GO:0030312	GO:GO:0031365	GO:GO:0042586	GO:GO:0043686
GO:GO:0046872	InterPro:IPR036821	EnsemblPlantsGene:Os01g0555800	EnsemblPlants:Os01t0555800-01	PFAM:PF01327	PIRSF:PIRSF004749
PRINTS:PR01576	PANTHER:PTHR10458	PANTHER:PTHR10458:SF11	InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf	SUPFAM:SSF56420
UniParc:UPI0000DD8B92	:	:	:	:	:

Description

peptide deformylase 1AFormylmethionine deformylase family protein. (Os01t0555800-01)

Coordinates

chr1:-:20953961..20954922

Molecular Weight (calculated)

13641.5 Da

IEP (calculated)

7.441

GRAVY (calculated)

-0.279

Length

121 amino acids

Sequence
(BLAST)

001: SYAPKKDIEA QDRRPFDLLV IINPKLKTTS KRTALFFEGC LSVDGYRALV ERHLDVEVSG LDRNGRPIKV EASGWQARIL QHECDHLEGT LYVDTMVPRT
101: FRIVDNLDLP LPVGCPPIGA R

Best Arabidopsis Sequence Match ( AT1G15390.1 )
(BLAST)

001: MGLHRDEATA METLFRVSLR LLPVSAAVTC RSIRFPVSRP GSSHLLNRKL YNLPTSSSSS LSTKAGWLLG LGEKKKKVDL PEIVASGDPV LHEKAREVDP
101: GEIGSERIQK IIDDMIKVMR LAPGVGLAAP QIGVPLRIIV LEDTKEYISY APKEEILAQE RRHFDLMVMV NPVLKERSNK KALFFEGCLS VDGFRAAVER
201: YLEVVVTGYD RQGKRIEVNA SGWQARILQH ECDHLDGNLY VDKMVPRTFR TVDNLDLPLA EGCPKLGPQ

Arabidopsis Description

PDF1APeptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A178WDP8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.