CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026135.1-P	Field mustard	mitochondrion	87.97	81.23
CDY36556	Canola	mitochondrion	87.55	81.15
GSMUA_Achr1P05350_001	Banana	cytosol, mitochondrion	50.21	78.06
CDX81711	Canola	mitochondrion	79.67	75.0
CDY55984	Canola	mitochondrion	79.67	74.71
AT1G15390.1	Thale cress	plastid	79.67	71.38
Os01t0555800-01	Rice	plastid	35.27	70.25
KRH33613	Soybean	cytosol	36.93	64.96
KRH44431	Soybean	mitochondrion	65.15	62.3
KRH09750	Soybean	cytosol, mitochondrion	54.77	59.19
PGSC0003DMT400077039	Potato	mitochondrion	67.22	58.7
Solyc07g015860.2.1	Tomato	plastid	66.81	58.12
VIT_09s0002g06390.t01	Wine grape	cytosol, plastid	65.56	57.04
KXG36812	Sorghum	plastid	58.51	55.29
TraesCS3D01G205000.1	Wheat	plastid	57.26	54.12
Zm00001d022337_P002	Maize	plastid	57.26	53.91
TraesCS3A01G204000.1	Wheat	plastid	57.26	53.49
TraesCS3B01G234300.1	Wheat	plastid	57.26	53.49
HORVU3Hr1G047870.3	Barley	plastid	57.26	53.28
HORVU3Hr1G039820.2	Barley	cytosol, mitochondrion, plastid	20.75	34.97
CDY09874	Canola	plastid	26.97	23.64
CDX69568	Canola	plastid	26.97	23.38

Protein Annotations

MapMan:17.7.6.1	Gene3D:3.90.45.10	GO:A0A078HP65	UniProt:A0A078HP65	EnsemblPlants:CDY39642	ProteinID:CDY39642
ProteinID:CDY39642.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0042586
GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00068211001	InterPro:IPR036821	HAMAP:MF_00163	PFAM:PF01327	PRINTS:PR01576
PANTHER:PTHR10458	PANTHER:PTHR10458:SF11	InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf	SUPFAM:SSF56420	TIGRFAMs:TIGR00079
UniParc:UPI0004EED7D3	SEG:seg	:	:	:	:

Description

BnaC05g11710DPeptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A078HP65]

Coordinates

chrLK032453:+:220498..221502

Molecular Weight (calculated)

26758.5 Da

IEP (calculated)

6.676

GRAVY (calculated)

-0.193

Length

241 amino acids

Sequence
(BLAST)

001: METLFRVSLR LLPVCHGAIR FPFSSSSASS SVKTNAGWLL GLGDKKKKPT NIPDIVAAGD PVLHEKAREV DPDEIGSERI HKIIDDMVKV MRLAPGVGLA
101: APQIGIPLRI IVLEDTKEYI SYAPKEEVLA QERRPFDLLV MVNPELKGVS NKKALFFEGC LSVDGFRGAV ERYLEVEVTG YDRQGKRIEV NASGWQARIL
201: QHECDHLDGN LYVDKMIPRT FRTVDNLDLP LAEGCPKLGP Q

Best Arabidopsis Sequence Match ( AT1G15390.1 )
(BLAST)

001: MGLHRDEATA METLFRVSLR LLPVSAAVTC RSIRFPVSRP GSSHLLNRKL YNLPTSSSSS LSTKAGWLLG LGEKKKKVDL PEIVASGDPV LHEKAREVDP
101: GEIGSERIQK IIDDMIKVMR LAPGVGLAAP QIGVPLRIIV LEDTKEYISY APKEEILAQE RRHFDLMVMV NPVLKERSNK KALFFEGCLS VDGFRAAVER
201: YLEVVVTGYD RQGKRIEVNA SGWQARILQH ECDHLDGNLY VDKMVPRTFR TVDNLDLPLA EGCPKLGPQ

Arabidopsis Description

PDF1APeptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A178WDP8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.