Factsheet for Solyc07g015860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077039	Potato	mitochondrion	95.67	96.01
GSMUA_Achr1P05350_001	Banana	cytosol, mitochondrion	47.29	84.52
Os01t0555800-01	Rice	plastid	33.21	76.03
KRH33613	Soybean	cytosol	33.94	68.61
CDY39642	Canola	mitochondrion	58.12	66.81
KRH44431	Soybean	mitochondrion	59.93	65.87
CDY36556	Canola	mitochondrion	61.37	65.38
Bra026135.1-P	Field mustard	mitochondrion	61.01	64.75
CDY55984	Canola	mitochondrion	59.93	64.59
CDX81711	Canola	mitochondrion	59.57	64.45
Bra026766.1-P	Field mustard	mitochondrion	59.93	64.09
VIT_09s0002g06390.t01	Wine grape	cytosol, plastid	61.73	61.73
KRH09750	Soybean	cytosol, mitochondrion	48.38	60.09
AT1G15390.1	Thale cress	plastid	57.04	58.74
KXG36812	Sorghum	plastid	53.43	58.04
TraesCS3B01G234300.1	Wheat	plastid	53.43	57.36
TraesCS3D01G205000.1	Wheat	plastid	52.71	57.25
HORVU3Hr1G047870.3	Barley	plastid	53.43	57.14
Zm00001d022337_P002	Maize	plastid	52.71	57.03
TraesCS3A01G204000.1	Wheat	plastid	52.71	56.59
HORVU3Hr1G039820.2	Barley	cytosol, mitochondrion, plastid	18.77	36.36
Solyc02g086680.2.1	Tomato	plastid	19.86	19.71

Protein Annotations

MapMan:17.7.6.1	Gene3D:3.90.45.10	EMBL:AF271258	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009505	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016787	GO:GO:0018206	GO:GO:0019538
GO:GO:0030312	GO:GO:0031365	GO:GO:0042586	GO:GO:0043686	GO:GO:0046872	InterPro:IPR036821
HAMAP:MF_00163	PFAM:PF01327	PRINTS:PR01576	PANTHER:PTHR10458	PANTHER:PTHR10458:SF11	InterPro:Peptide_deformylase
InterPro:Peptide_deformylase_sf	UniProt:Q9FUZ0	SUPFAM:SSF56420	EnsemblPlantsGene:Solyc07g015860.2	EnsemblPlants:Solyc07g015860.2.1	TIGRFAMs:TIGR00079
UniParc:UPI0000129143	:	:	:	:	:

Description

PDF1APeptide deformylase 1A, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FUZ0]

Coordinates

chr7:+:5626709..5629569

Molecular Weight (calculated)

30988.0 Da

IEP (calculated)

9.810

GRAVY (calculated)

-0.287

Length

277 amino acids

Sequence
(BLAST)

001: MMERFPRLAQ RVLSVPFTPK YLKSCKKTNP LTSHLMQLRG SQRPIFIQWN LQGRPSVCTD LISKKNYSSA TARAGWFLGL GEKKKQAMPD IVKAGDPVLH
101: EPSQDIPLEE IGSERIQKII EEMVKVMRNA PGVGLAAPQI GIPLKIIVLE DTNEYISYAP KDETKAQDRR PFGLLVIINP KLKKKGNKTA LFFEGCLSVD
201: GFRAVVERHL EVEVTGLDRN GKAIKVDASG WQARILQHEY DHLDGTLYVD KMAPRTFRTV ENLDLPLAAG CPKLGVC

Best Arabidopsis Sequence Match ( AT1G15390.1 )
(BLAST)

001: MGLHRDEATA METLFRVSLR LLPVSAAVTC RSIRFPVSRP GSSHLLNRKL YNLPTSSSSS LSTKAGWLLG LGEKKKKVDL PEIVASGDPV LHEKAREVDP
101: GEIGSERIQK IIDDMIKVMR LAPGVGLAAP QIGVPLRIIV LEDTKEYISY APKEEILAQE RRHFDLMVMV NPVLKERSNK KALFFEGCLS VDGFRAAVER
201: YLEVVVTGYD RQGKRIEVNA SGWQARILQH ECDHLDGNLY VDKMVPRTFR TVDNLDLPLA EGCPKLGPQ

Arabidopsis Description

PDF1APeptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A178WDP8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.