CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55984	Canola	mitochondrion	96.88	96.5
CDY36556	Canola	mitochondrion	81.64	80.38
AT1G15390.1	Thale cress	plastid	84.38	80.3
CDY39642	Canola	mitochondrion	75.0	79.67
GSMUA_Achr1P05350_001	Banana	cytosol, mitochondrion	47.27	78.06
Os01t0555800-01	Rice	plastid	32.81	69.42
KRH33613	Soybean	cytosol	34.38	64.23
KRH44431	Soybean	mitochondrion	62.5	63.49
VIT_09s0002g06390.t01	Wine grape	cytosol, plastid	66.02	61.01
PGSC0003DMT400077039	Potato	mitochondrion	64.84	60.14
KRH09750	Soybean	cytosol, mitochondrion	52.34	60.09
Solyc07g015860.2.1	Tomato	plastid	64.45	59.57
Zm00001d022337_P002	Maize	plastid	57.03	57.03
KXG36812	Sorghum	plastid	56.64	56.86
TraesCS3D01G205000.1	Wheat	plastid	55.86	56.08
TraesCS3B01G234300.1	Wheat	plastid	55.86	55.43
TraesCS3A01G204000.1	Wheat	plastid	55.47	55.04
HORVU3Hr1G047870.3	Barley	plastid	55.47	54.83
HORVU3Hr1G039820.2	Barley	cytosol, mitochondrion, plastid	21.09	37.76
CDY09874	Canola	plastid	26.17	24.36
CDX69568	Canola	plastid	26.17	24.1

Protein Annotations

MapMan:17.7.6.1	Gene3D:3.90.45.10	GO:A0A078CX17	EnsemblPlants:CDX81711	ProteinID:CDX81711	ProteinID:CDX81711.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0016787	GO:GO:0042586	EnsemblPlantsGene:GSBRNA2T00136637001	InterPro:IPR036821
HAMAP:MF_00163	PFAM:PF01327	PRINTS:PR01576	PANTHER:PTHR10458	PANTHER:PTHR10458:SF11	InterPro:Peptide_deformylase
InterPro:Peptide_deformylase_sf	SUPFAM:SSF56420	SignalP:SignalP-noTM	TIGRFAMs:TIGR00079	UniParc:UPI0004EDFBC0	SEG:seg

Description

BnaC08g38900D

Coordinates

chrLK031826:+:443652..444687

Molecular Weight (calculated)

28627.7 Da

IEP (calculated)

8.325

GRAVY (calculated)

-0.198

Length

256 amino acids

Sequence
(BLAST)

001: MATIFRFSLR LLPVSAAVAC RSTRFPVSRP DTSFSLNHNL YHFSSSSLKT KAGWLLGLGD KKKKVDLPDI VAAGDPVLHE KAREVDPDEI GSERIQKIID
101: DMVKVMRLAP GVGLAAPQIG VPLRIIVLED TKEYISYAPK EETFAQNRRP FDLMVMVNPE LKASSDKKAL FFEGCLSVDG FRAVVERHLE VVVTGYDRRG
201: KRIEVNASGW QARILQHECD HLDGNLYVDK MIPRTFRTVE NLDLPLAEGC PKLGPQ

Best Arabidopsis Sequence Match ( AT1G15390.1 )
(BLAST)

001: MGLHRDEATA METLFRVSLR LLPVSAAVTC RSIRFPVSRP GSSHLLNRKL YNLPTSSSSS LSTKAGWLLG LGEKKKKVDL PEIVASGDPV LHEKAREVDP
101: GEIGSERIQK IIDDMIKVMR LAPGVGLAAP QIGVPLRIIV LEDTKEYISY APKEEILAQE RRHFDLMVMV NPVLKERSNK KALFFEGCLS VDGFRAAVER
201: YLEVVVTGYD RQGKRIEVNA SGWQARILQH ECDHLDGNLY VDKMVPRTFR TVDNLDLPLA EGCPKLGPQ

Arabidopsis Description

PDF1APeptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A178WDP8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.