Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55984 | Canola | mitochondrion | 80.67 | 84.44 |
| CDX81711 | Canola | mitochondrion | 80.3 | 84.38 |
| Bra026766.1-P | Field mustard | mitochondrion | 81.04 | 84.17 |
| CDY39642 | Canola | mitochondrion | 71.38 | 79.67 |
| Bra026135.1-P | Field mustard | mitochondrion | 76.95 | 79.31 |
| CDY36556 | Canola | mitochondrion | 76.21 | 78.85 |
| GSMUA_Achr1P05350_001 | Banana | cytosol, mitochondrion | 44.98 | 78.06 |
| Os01t0555800-01 | Rice | plastid | 31.6 | 70.25 |
| KRH33613 | Soybean | cytosol | 32.34 | 63.5 |
| KRH44431 | Soybean | mitochondrion | 58.74 | 62.7 |
| VIT_09s0002g06390.t01 | Wine grape | cytosol, plastid | 61.71 | 59.93 |
| KRH09750 | Soybean | cytosol, mitochondrion | 49.44 | 59.64 |
| PGSC0003DMT400077039 | Potato | mitochondrion | 59.11 | 57.61 |
| Solyc07g015860.2.1 | Tomato | plastid | 58.74 | 57.04 |
| KXG36812 | Sorghum | plastid | 53.16 | 56.08 |
| TraesCS3D01G205000.1 | Wheat | plastid | 52.79 | 55.69 |
| TraesCS3B01G234300.1 | Wheat | plastid | 53.16 | 55.43 |
| Zm00001d022337_P002 | Maize | plastid | 52.42 | 55.08 |
| TraesCS3A01G204000.1 | Wheat | plastid | 52.04 | 54.26 |
| HORVU3Hr1G047870.3 | Barley | plastid | 52.04 | 54.05 |
| HORVU3Hr1G039820.2 | Barley | cytosol, mitochondrion, plastid | 19.33 | 36.36 |
| AT5G14660.1 | Thale cress | plastid | 24.54 | 24.18 |
Protein Annotations
| MapMan:17.7.6.1 | PDB:1ZXZ | PDB:1ZY0 | PDB:1ZY1 | Gene3D:3.90.45.10 | PDB:4JE6 |
| PDB:4JE7 | PDB:4JE8 | EntrezGene:838109 | UniProt:A0A178WDP8 | ProteinID:AAD39667.1 | ProteinID:AEE29315.1 |
| EMBL:AF250959 | EMBL:AF361861 | ArrayExpress:AT1G15390 | EnsemblPlantsGene:AT1G15390 | RefSeq:AT1G15390 | TAIR:AT1G15390 |
| RefSeq:AT1G15390-TAIR-G | EnsemblPlants:AT1G15390.1 | TAIR:AT1G15390.1 | EMBL:AY129485 | CHEMBL:CHEMBL1075041 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006412 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009505 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0018206 | GO:GO:0019538 | GO:GO:0030312 | GO:GO:0031365 | GO:GO:0042586 |
| GO:GO:0043686 | GO:GO:0046872 | InterPro:IPR036821 | HAMAP:MF_00163 | RefSeq:NP_563974.1 | ProteinID:OAP15493.1 |
| Symbol:PDF1A | PFAM:PF01327 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PRINTS:PR01576 | PANTHER:PTHR10458 | PANTHER:PTHR10458:SF11 | InterPro:Peptide_deformylase | InterPro:Peptide_deformylase_sf |
| UniProt:Q9FV53 | SUPFAM:SSF56420 | TIGRFAMs:TIGR00079 | UniParc:UPI0000162D93 | SEG:seg | : |
Description
PDF1APeptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A178WDP8]
Coordinates
chr1:+:5294629..5295931
Molecular Weight (calculated)
29997.6 Da
IEP (calculated)
8.607
GRAVY (calculated)
-0.202
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLHRDEATA METLFRVSLR LLPVSAAVTC RSIRFPVSRP GSSHLLNRKL YNLPTSSSSS LSTKAGWLLG LGEKKKKVDL PEIVASGDPV LHEKAREVDP
101: GEIGSERIQK IIDDMIKVMR LAPGVGLAAP QIGVPLRIIV LEDTKEYISY APKEEILAQE RRHFDLMVMV NPVLKERSNK KALFFEGCLS VDGFRAAVER
201: YLEVVVTGYD RQGKRIEVNA SGWQARILQH ECDHLDGNLY VDKMVPRTFR TVDNLDLPLA EGCPKLGPQ
101: GEIGSERIQK IIDDMIKVMR LAPGVGLAAP QIGVPLRIIV LEDTKEYISY APKEEILAQE RRHFDLMVMV NPVLKERSNK KALFFEGCLS VDGFRAAVER
201: YLEVVVTGYD RQGKRIEVNA SGWQARILQH ECDHLDGNLY VDKMVPRTFR TVDNLDLPLA EGCPKLGPQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.