Factsheet for Bra026135.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36556	Canola	mitochondrion	97.32	97.69
CDY39642	Canola	mitochondrion	81.23	87.97
Bra026766.1-P	Field mustard	mitochondrion	80.84	81.47
GSMUA_Achr1P05350_001	Banana	cytosol, mitochondrion	46.74	78.71
AT1G15390.1	Thale cress	plastid	79.31	76.95
Os01t0555800-01	Rice	plastid	32.95	71.07
KRH33613	Soybean	cytosol	35.25	67.15
KRH44431	Soybean	mitochondrion	62.45	64.68
VIT_09s0002g06390.t01	Wine grape	cytosol, plastid	65.9	62.09
KRH09750	Soybean	cytosol, mitochondrion	52.87	61.88
PGSC0003DMT400077039	Potato	mitochondrion	65.13	61.59
Solyc07g015860.2.1	Tomato	plastid	64.75	61.01
KXG36812	Sorghum	plastid	55.94	57.25
Zm00001d022337_P002	Maize	plastid	55.17	56.25
TraesCS3D01G205000.1	Wheat	plastid	54.41	55.69
TraesCS3B01G234300.1	Wheat	plastid	54.79	55.43
TraesCS3A01G204000.1	Wheat	plastid	54.41	55.04
HORVU3Hr1G047870.3	Barley	plastid	54.02	54.44
HORVU3Hr1G039820.2	Barley	cytosol, mitochondrion, plastid	20.31	37.06
Bra008747.1-P	Field mustard	plastid	23.75	22.38

Protein Annotations

MapMan:17.7.6.1	Gene3D:3.90.45.10	EnsemblPlantsGene:Bra026135	EnsemblPlants:Bra026135.1	EnsemblPlants:Bra026135.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0042586	GO:GO:0046872	InterPro:IPR036821
UniProt:M4EBH6	HAMAP:MF_00163	PFAM:PF01327	PRINTS:PR01576	PANTHER:PTHR10458	PANTHER:PTHR10458:SF11
InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf	SUPFAM:SSF56420	TIGRFAMs:TIGR00079	UniParc:UPI000253F043	SEG:seg

Description

AT1G15390 (E=9e-115) PDF1A, ATDEF1 | PDF1A (PEPTIDE DEFORMYLASE 1A); peptide deformylase

Coordinates

chrA06:+:5917604..5918815

Molecular Weight (calculated)

28982.1 Da

IEP (calculated)

7.555

GRAVY (calculated)

-0.199

Length

261 amino acids

Sequence
(BLAST)

001: METLFRVSLR LLPVSAAVTR RGAIRFPVST PGSSSHLLNH ILYKFSSSSS SVKTNAGWLL GLGDKKKKPT NLPDIVAAGD PVLHEKAREV DPDEIGSERI
101: QKIIDDMVKV MRLAPGVGLA APQIGIPLRI IVLEDTKEYI SYAPKEEVLA QERRPFDLLV IVNPELKEVS NKKALFFEGC LSVDGFRGAV ERYLEVEVTG
201: YDRQGKRIEV NASGWQARIL QHECDHLDGN LYVDKMIPRT FRTVDNLDLP LAEGCPKLGP Q

Best Arabidopsis Sequence Match ( AT1G15390.1 )
(BLAST)

001: MGLHRDEATA METLFRVSLR LLPVSAAVTC RSIRFPVSRP GSSHLLNRKL YNLPTSSSSS LSTKAGWLLG LGEKKKKVDL PEIVASGDPV LHEKAREVDP
101: GEIGSERIQK IIDDMIKVMR LAPGVGLAAP QIGVPLRIIV LEDTKEYISY APKEEILAQE RRHFDLMVMV NPVLKERSNK KALFFEGCLS VDGFRAAVER
201: YLEVVVTGYD RQGKRIEVNA SGWQARILQH ECDHLDGNLY VDKMVPRTFR TVDNLDLPLA EGCPKLGPQ

Arabidopsis Description

PDF1APeptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A178WDP8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.