Factsheet for PGSC0003DMT400077039

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g015860.2.1	Tomato	plastid	96.01	95.67
GSMUA_Achr1P05350_001	Banana	cytosol, mitochondrion	47.1	83.87
Os01t0555800-01	Rice	plastid	33.33	76.03
KRH33613	Soybean	cytosol	34.78	70.07
CDY39642	Canola	mitochondrion	58.7	67.22
KRH44431	Soybean	mitochondrion	61.23	67.06
CDY36556	Canola	mitochondrion	61.96	65.77
Bra026135.1-P	Field mustard	mitochondrion	61.59	65.13
CDY55984	Canola	mitochondrion	60.51	64.98
CDX81711	Canola	mitochondrion	60.14	64.84
Bra026766.1-P	Field mustard	mitochondrion	60.51	64.48
VIT_09s0002g06390.t01	Wine grape	cytosol, plastid	62.68	62.45
KRH09750	Soybean	cytosol, mitochondrion	49.28	60.99
KXG36812	Sorghum	plastid	55.07	59.61
AT1G15390.1	Thale cress	plastid	57.61	59.11
Zm00001d022337_P002	Maize	plastid	54.35	58.59
TraesCS3B01G234300.1	Wheat	plastid	54.35	58.14
TraesCS3D01G205000.1	Wheat	plastid	53.62	58.04
HORVU3Hr1G047870.3	Barley	plastid	54.35	57.92
TraesCS3A01G204000.1	Wheat	plastid	53.26	56.98
HORVU3Hr1G039820.2	Barley	cytosol, mitochondrion, plastid	19.57	37.76
PGSC0003DMT400001396	Potato	plastid	20.29	20.22

Protein Annotations

EntrezGene:102581807	MapMan:17.7.6.1	Gene3D:3.90.45.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006412	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009505
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030312
GO:GO:0042586	GO:GO:0043686	GO:GO:0046872	InterPro:IPR036821	UniProt:M1CXT8	HAMAP:MF_00163
PFAM:PF01327	EnsemblPlantsGene:PGSC0003DMG400029962	PGSC:PGSC0003DMG400029962	EnsemblPlants:PGSC0003DMT400077039	PRINTS:PR01576	PANTHER:PTHR10458
PANTHER:PTHR10458:SF11	InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf	SUPFAM:SSF56420	TIGRFAMs:TIGR00079	UniParc:UPI0002968231
RefSeq:XP_006359723.1	RefSeq:XP_006359724.1	RefSeq:XP_006359727.1	RefSeq:XP_015170017.1	:	:

Description

Peptide deformylase 1A, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400029962]

Coordinates

chr7:+:8517561..8520484

Molecular Weight (calculated)

31019.9 Da

IEP (calculated)

9.821

GRAVY (calculated)

-0.306

Length

276 amino acids

Sequence
(BLAST)

001: MERFPRLAQR VLSVPFTPKY LKSCKKTNPL TSHLMQLRGS QRPVFIQWNL QGRPSVCTDL VSKRNYSSTT ARAGWFLGLG EKKKQVMPDI VKAGDPVLHE
101: PSQDVPLEEI GSERIQKIID EMVKVMRNAP GVGLAAPQIG IPLKIIVLED TNEYISYAPK DETKAQDRRP FDLLVIINPK LKKKGNKTAL FFEGCLSVDG
201: FRAVVERHLQ VEVTGLDRNG KAIKVDASGW QARILQHEYD HLDGTIYVDK MFPRTFRTVE NLDLPLAAGC PKLGVC

Best Arabidopsis Sequence Match ( AT1G15390.1 )
(BLAST)

001: MGLHRDEATA METLFRVSLR LLPVSAAVTC RSIRFPVSRP GSSHLLNRKL YNLPTSSSSS LSTKAGWLLG LGEKKKKVDL PEIVASGDPV LHEKAREVDP
101: GEIGSERIQK IIDDMIKVMR LAPGVGLAAP QIGVPLRIIV LEDTKEYISY APKEEILAQE RRHFDLMVMV NPVLKERSNK KALFFEGCLS VDGFRAAVER
201: YLEVVVTGYD RQGKRIEVNA SGWQARILQH ECDHLDGNLY VDKMVPRTFR TVDNLDLPLA EGCPKLGPQ

Arabidopsis Description

PDF1APeptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A178WDP8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.