CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
golgi 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33613	Soybean	cytosol	47.62	87.59
GSMUA_Achr1P05350_001	Banana	cytosol, mitochondrion	49.21	80.0
Os01t0555800-01	Rice	plastid	36.51	76.03
KRH09750	Soybean	cytosol, mitochondrion	58.73	66.37
CDY39642	Canola	mitochondrion	62.3	65.15
CDX81711	Canola	mitochondrion	63.49	62.5
Bra026135.1-P	Field mustard	mitochondrion	64.68	62.45
CDY55984	Canola	mitochondrion	63.49	62.26
VIT_09s0002g06390.t01	Wine grape	cytosol, plastid	68.25	62.09
CDY36556	Canola	mitochondrion	63.89	61.92
Bra026766.1-P	Field mustard	mitochondrion	63.1	61.39
PGSC0003DMT400077039	Potato	mitochondrion	67.06	61.23
KXG36812	Sorghum	plastid	60.71	60.0
Solyc07g015860.2.1	Tomato	plastid	65.87	59.93
TraesCS3B01G234300.1	Wheat	plastid	60.71	59.3
TraesCS3D01G205000.1	Wheat	plastid	59.92	59.22
HORVU3Hr1G047870.3	Barley	plastid	60.71	59.07
TraesCS3A01G204000.1	Wheat	plastid	60.32	58.91
AT1G15390.1	Thale cress	plastid	62.7	58.74
Zm00001d022337_P002	Maize	plastid	59.13	58.2
HORVU3Hr1G039820.2	Barley	cytosol, mitochondrion, plastid	21.43	37.76
KRG94880	Soybean	plastid	17.86	22.61
KRG94095	Soybean	mitochondrion, plastid	23.02	21.72

Protein Annotations

EntrezGene:100784292	MapMan:17.7.6.1	Gene3D:3.90.45.10	EMBL:ACUP02004928	EnsemblPlantsGene:GLYMA_08G210900	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0018206	GO:GO:0019538	GO:GO:0031365
GO:GO:0042586	GO:GO:0043686	GO:GO:0046872	UniProt:I1KVC5	InterPro:IPR036821	EnsemblPlants:KRH44431
ProteinID:KRH44431	ProteinID:KRH44431.1	ProteinID:KRH44432.1	ProteinID:KRH44433.1	HAMAP:MF_00163	PFAM:PF01327
PRINTS:PR01576	PANTHER:PTHR10458	PANTHER:PTHR10458:SF11	InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf	SUPFAM:SSF56420
TIGRFAMs:TIGR00079	UniParc:UPI0000E19AB9	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:17031091..17034154

Molecular Weight (calculated)

28082.3 Da

IEP (calculated)

8.913

GRAVY (calculated)

-0.224

Length

252 amino acids

Sequence
(BLAST)

001: MEALHLHRVL LMPVSQKTSI FLRASGTPLS TLARPPLRWS SQTCSARAGW FLGLGADSKK TNLPDTVKAG DPVLHEPAQD VDPNEIKSER VQKIIDDMIQ
101: VMRKAPGVGL AAPQIGIPLR IIVLEDTKEY ISYVSKEEAK TQDRRPFDLL VILNPKLEKK GKRTALFFEG CLSVDGFRAV VERHLDVEVT GLDRYGAPIK
201: IIASGWQARI LQHECDHLDG TLYVDKMLPR TFRTVDNMDL PLAQGCPKLG PR

Best Arabidopsis Sequence Match ( AT1G15390.1 )
(BLAST)

001: MGLHRDEATA METLFRVSLR LLPVSAAVTC RSIRFPVSRP GSSHLLNRKL YNLPTSSSSS LSTKAGWLLG LGEKKKKVDL PEIVASGDPV LHEKAREVDP
101: GEIGSERIQK IIDDMIKVMR LAPGVGLAAP QIGVPLRIIV LEDTKEYISY APKEEILAQE RRHFDLMVMV NPVLKERSNK KALFFEGCLS VDGFRAAVER
201: YLEVVVTGYD RQGKRIEVNA SGWQARILQH ECDHLDGNLY VDKMVPRTFR TVDNLDLPLA EGCPKLGPQ

Arabidopsis Description

PDF1APeptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A178WDP8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.