CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026766.1-P	Field mustard	mitochondrion	98.05	97.3
CDX81711	Canola	mitochondrion	96.5	96.88
CDY36556	Canola	mitochondrion	82.1	81.15
AT1G15390.1	Thale cress	plastid	84.44	80.67
CDY39642	Canola	mitochondrion	74.71	79.67
GSMUA_Achr1P05350_001	Banana	cytosol, mitochondrion	47.08	78.06
Os01t0555800-01	Rice	plastid	32.68	69.42
KRH33613	Soybean	cytosol	34.24	64.23
KRH44431	Soybean	mitochondrion	62.26	63.49
VIT_09s0002g06390.t01	Wine grape	cytosol, plastid	66.15	61.37
PGSC0003DMT400077039	Potato	mitochondrion	64.98	60.51
KRH09750	Soybean	cytosol, mitochondrion	52.14	60.09
Solyc07g015860.2.1	Tomato	plastid	64.59	59.93
Zm00001d022337_P002	Maize	plastid	56.42	56.64
KXG36812	Sorghum	plastid	56.03	56.47
TraesCS3D01G205000.1	Wheat	plastid	55.25	55.69
TraesCS3B01G234300.1	Wheat	plastid	55.64	55.43
TraesCS3A01G204000.1	Wheat	plastid	54.86	54.65
HORVU3Hr1G047870.3	Barley	plastid	54.86	54.44
HORVU3Hr1G039820.2	Barley	cytosol, mitochondrion, plastid	20.62	37.06
CDY09874	Canola	plastid	25.68	24.0
CDX69568	Canola	plastid	25.68	23.74

Protein Annotations

MapMan:17.7.6.1	Gene3D:3.90.45.10	GO:A0A078J1Q3	UniProt:A0A078J1Q3	EnsemblPlants:CDY55984	ProteinID:CDY55984
ProteinID:CDY55984.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0042586
GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00017639001	InterPro:IPR036821	HAMAP:MF_00163	PFAM:PF01327	PRINTS:PR01576
PANTHER:PTHR10458	PANTHER:PTHR10458:SF11	InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf	SUPFAM:SSF56420	SignalP:SignalP-noTM
TIGRFAMs:TIGR00079	UniParc:UPI0004EE0477	SEG:seg	:	:	:

Description

BnaA09g56810DPeptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A078J1Q3]

Coordinates

chrLK033445:+:36328..37357

Molecular Weight (calculated)

28729.8 Da

IEP (calculated)

8.325

GRAVY (calculated)

-0.207

Length

257 amino acids

Sequence
(BLAST)

001: MATIFRFSLR LLPVSAAVTC RSTRFPVSRP DTSFSLNHNL YHFSSSSSLK TKAGWLLGLG DKKKKVDLPD IVAAGDPVLH EKAREVDPEE IGSERIQKII
101: DDMVKVMRLA PGVGLAAPQI GVPLRIIVLE DTKEYISYAP KEETFAQNRR PFDLMVMVNP ELKASSDKKA LFFEGCLSVD GFRAVVERHL EVVVTGYDRQ
201: GKRIQVNASG WQARILQHEC DHLDGNLYVD KMIPRTFRTV ENLDLPLAEG CPKLGPQ

Best Arabidopsis Sequence Match ( AT1G15390.1 )
(BLAST)

001: MGLHRDEATA METLFRVSLR LLPVSAAVTC RSIRFPVSRP GSSHLLNRKL YNLPTSSSSS LSTKAGWLLG LGEKKKKVDL PEIVASGDPV LHEKAREVDP
101: GEIGSERIQK IIDDMIKVMR LAPGVGLAAP QIGVPLRIIV LEDTKEYISY APKEEILAQE RRHFDLMVMV NPVLKERSNK KALFFEGCLS VDGFRAAVER
201: YLEVVVTGYD RQGKRIEVNA SGWQARILQH ECDHLDGNLY VDKMVPRTFR TVDNLDLPLA EGCPKLGPQ

Arabidopsis Description

PDF1APeptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A178WDP8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.