Factsheet for VIT_09s0002g06390.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P05350_001	Banana	cytosol, mitochondrion	45.49	81.29
Os01t0555800-01	Rice	plastid	33.21	76.03
KRH33613	Soybean	cytosol	33.94	68.61
KRH44431	Soybean	mitochondrion	62.09	68.25
CDY55984	Canola	mitochondrion	61.37	66.15
CDX81711	Canola	mitochondrion	61.01	66.02
Bra026135.1-P	Field mustard	mitochondrion	62.09	65.9
Bra026766.1-P	Field mustard	mitochondrion	61.37	65.64
CDY39642	Canola	mitochondrion	57.04	65.56
CDY36556	Canola	mitochondrion	61.37	65.38
PGSC0003DMT400077039	Potato	mitochondrion	62.45	62.68
KRH09750	Soybean	cytosol, mitochondrion	50.18	62.33
Solyc07g015860.2.1	Tomato	plastid	61.73	61.73
AT1G15390.1	Thale cress	plastid	59.93	61.71
Zm00001d022337_P002	Maize	plastid	54.51	58.98
TraesCS3B01G234300.1	Wheat	plastid	54.87	58.91
KXG36812	Sorghum	plastid	54.15	58.82
TraesCS3D01G205000.1	Wheat	plastid	53.79	58.43
TraesCS3A01G204000.1	Wheat	plastid	53.79	57.75
HORVU3Hr1G047870.3	Barley	plastid	53.79	57.53
HORVU3Hr1G039820.2	Barley	cytosol, mitochondrion, plastid	19.13	37.06
VIT_14s0066g01070.t01	Wine grape	plastid	22.02	22.18

Protein Annotations

EntrezGene:100258283	wikigene:100258283	MapMan:17.7.6.1	Gene3D:3.90.45.10	ProteinID:CBI36285	ProteinID:CBI36285.3
UniProt:D7U0Y9	EMBL:FN596494	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009505	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016787	GO:GO:0018206	GO:GO:0019538	GO:GO:0030312	GO:GO:0031365
GO:GO:0042586	GO:GO:0043686	GO:GO:0046872	InterPro:IPR036821	EntrezGene:LOC100258283	wikigene:LOC100258283
HAMAP:MF_00163	PFAM:PF01327	PRINTS:PR01576	PANTHER:PTHR10458	PANTHER:PTHR10458:SF11	InterPro:Peptide_deformylase
InterPro:Peptide_deformylase_sf	SUPFAM:SSF56420	TIGRFAMs:TIGR00079	UniParc:UPI0001983FBB	ArrayExpress:VIT_09s0002g06390	EnsemblPlantsGene:VIT_09s0002g06390
EnsemblPlants:VIT_09s0002g06390.t01	unigene:Vvi.22398	RefSeq:XP_002281834	RefSeq:XP_002281834.1	SEG:seg	:

Description

Peptide deformylase [Source:UniProtKB/TrEMBL;Acc:D7U0Y9]

Coordinates

chr9:-:6294173..6300771

Molecular Weight (calculated)

30683.5 Da

IEP (calculated)

9.845

GRAVY (calculated)

-0.196

Length

277 amino acids

Sequence
(BLAST)

001: MESISRFSQR LLPTCLAENC LINPITSPFR LIPSLQFHPT LIPTSKPGPS DPNRIFSTRK TYRPSSSSST LIASAGWILG LGDKKPALPE IVKAGDPVLH
101: ESAQEVEPGE IGSDRIQKII DDMIKAMRTA PGVGLAAPQI GIPLRIIVLE DTKEYISYDR KDVIKAQERR PFDLLVILNP KLRKKGNRTA FFFEGCLSVD
201: GFRAVVERHL QVEVTGLSRN GKPIKVDASG WKARILQHEC DHLDGTLYVD KMVPRTFRTV QNIDLPLAVG CPKLGAR

Best Arabidopsis Sequence Match ( AT1G15390.1 )
(BLAST)

001: MGLHRDEATA METLFRVSLR LLPVSAAVTC RSIRFPVSRP GSSHLLNRKL YNLPTSSSSS LSTKAGWLLG LGEKKKKVDL PEIVASGDPV LHEKAREVDP
101: GEIGSERIQK IIDDMIKVMR LAPGVGLAAP QIGVPLRIIV LEDTKEYISY APKEEILAQE RRHFDLMVMV NPVLKERSNK KALFFEGCLS VDGFRAAVER
201: YLEVVVTGYD RQGKRIEVNA SGWQARILQH ECDHLDGNLY VDKMVPRTFR TVDNLDLPLA EGCPKLGPQ

Arabidopsis Description

PDF1APeptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A178WDP8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.